Detailed information    

insolico Bioinformatically predicted

Overview

Name   letS   Type   Regulator
Locus tag   RO839_RS09480 Genome accession   NZ_CP135132
Coordinates   2051840..2052067 (+) Length   75 a.a.
NCBI ID   WP_235443655.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CO33     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2046840..2057067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO839_RS09460 (RO839_09460) - 2047254..2047691 (-) 438 WP_057682751.1 polymer-forming cytoskeletal protein -
  RO839_RS09465 (RO839_09465) - 2047693..2048370 (-) 678 WP_235443646.1 DUF6776 family protein -
  RO839_RS09470 (RO839_09470) - 2049211..2049363 (+) 153 WP_164874317.1 hypothetical protein -
  RO839_RS09475 (RO839_09475) - 2049332..2051032 (+) 1701 WP_057682750.1 EAL domain-containing protein -
  RO839_RS09480 (RO839_09480) letS 2051840..2052067 (+) 228 WP_235443655.1 ATP-binding protein Regulator
  RO839_RS09485 (RO839_09485) - 2053047..2053253 (+) 207 WP_081033452.1 Hpt domain-containing protein -
  RO839_RS09490 (RO839_09490) bfr 2053261..2053725 (-) 465 WP_057682748.1 bacterioferritin -
  RO839_RS09495 (RO839_09495) - 2053807..2054022 (-) 216 WP_027700186.1 bacterioferritin-associated ferredoxin -
  RO839_RS09500 (RO839_09500) - 2054134..2054706 (-) 573 WP_057682747.1 RNA pyrophosphohydrolase -
  RO839_RS09515 (RO839_09515) metK 2055079..2056290 (-) 1212 WP_057682746.1 methionine adenosyltransferase -

Sequence

Protein


Download         Length: 75 a.a.        Molecular weight: 8292.45 Da        Isoelectric Point: 6.9746

>NTDB_id=810134 RO839_RS09480 WP_235443655.1 2051840..2052067(+) (letS) [Xylella fastidiosa strain CO33]
MHDTGICISSEQQIRLFSSFSQADTSTTRLYESTALGLAWLGKMSGRIVIESQRGVGSTLWFEIPLLKAARELNS

Nucleotide


Download         Length: 228 bp        

>NTDB_id=810134 RO839_RS09480 WP_235443655.1 2051840..2052067(+) (letS) [Xylella fastidiosa strain CO33]
GTGCACGATACCGGTATCTGTATTTCTTCCGAACAGCAAATACGACTGTTCTCTTCGTTCAGCCAAGCTGACACTTCAAC
CACACGCCTATACGAGAGCACAGCGCTTGGCTTGGCTTGGCTTGGCAAAATGAGTGGGCGAATCGTAATAGAATCGCAAC
GTGGCGTCGGCTCCACGTTATGGTTCGAAATCCCACTACTGAAGGCAGCTCGTGAATTAAACTCTTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(2-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letS Legionella pneumophila strain ERS1305867

47.143

93.333

0.44