Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RO839_RS09270 Genome accession   NZ_CP135132
Coordinates   2000194..2000580 (+) Length   128 a.a.
NCBI ID   WP_004083584.1    Uniprot ID   B2I7W3
Organism   Xylella fastidiosa strain CO33     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1995194..2005580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO839_RS09250 (RO839_09250) - 1996591..1996793 (-) 203 Protein_1807 DUF2065 family protein -
  RO839_RS09255 (RO839_09255) - 1996953..1997816 (-) 864 WP_004083581.1 protease modulator HflC -
  RO839_RS09260 (RO839_09260) hflK 1997813..1998952 (-) 1140 WP_004089789.1 FtsH protease activity modulator HflK -
  RO839_RS09265 (RO839_09265) - 1999097..2000101 (+) 1005 WP_057682775.1 oxidoreductase -
  RO839_RS09270 (RO839_09270) pilH 2000194..2000580 (+) 387 WP_004083584.1 twitching motility response regulator PilH Machinery gene
  RO839_RS09275 (RO839_09275) - 2001162..2001512 (-) 351 WP_004083585.1 DMT family protein -
  RO839_RS09280 (RO839_09280) - 2002594..2002968 (-) 375 WP_057682774.1 H-NS family nucleoid-associated regulatory protein -
  RO839_RS09285 (RO839_09285) - 2003112..2004806 (-) 1695 WP_057682773.1 proline--tRNA ligase -
  RO839_RS09290 (RO839_09290) - 2004891..2005268 (-) 378 WP_057682772.1 DUF4124 domain-containing protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14261.45 Da        Isoelectric Point: 6.7299

>NTDB_id=810133 RO839_RS09270 WP_004083584.1 2000194..2000580(+) (pilH) [Xylella fastidiosa strain CO33]
MARILIVEDSPSQLLSIQRIVEKLGHETITATDGNTGVEAAKAHLPDLVLMDVVMPKINGFQATRTLKREPATQHVPVVL
VTTKDQDTDRLWGIRQGARAYITKPFSESELLEVMERIFSQPKAKANE

Nucleotide


Download         Length: 387 bp        

>NTDB_id=810133 RO839_RS09270 WP_004083584.1 2000194..2000580(+) (pilH) [Xylella fastidiosa strain CO33]
ATGGCACGCATTTTGATCGTCGAGGACTCACCGTCACAATTACTCAGCATCCAGAGAATCGTCGAGAAACTAGGGCACGA
AACAATTACCGCAACCGATGGCAACACCGGGGTAGAGGCAGCCAAAGCACATTTACCTGATCTGGTACTGATGGACGTGG
TCATGCCTAAAATTAATGGGTTTCAAGCCACACGCACACTCAAGCGCGAACCAGCAACGCAACATGTACCAGTCGTCCTG
GTAACCACCAAGGACCAAGACACTGATCGGCTATGGGGCATACGCCAGGGCGCGCGCGCCTACATCACCAAGCCTTTCTC
AGAGAGTGAATTGCTAGAAGTCATGGAAAGAATATTCAGCCAACCAAAAGCAAAAGCGAACGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I7W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

41.176

92.969

0.383