Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P8T86_RS05025 Genome accession   NZ_CP121102
Coordinates   875669..876622 (+) Length   317 a.a.
NCBI ID   WP_024094004.1    Uniprot ID   A0AAP5JX12
Organism   Paenibacillus larvae strain PL006     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 870669..881622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8T86_RS05010 (P8T86_04985) fdhF 871103..874051 (+) 2949 WP_023484253.1 formate dehydrogenase subunit alpha -
  P8T86_RS05015 (P8T86_04990) - 874054..874545 (+) 492 WP_023484252.1 DUF1641 domain-containing protein -
  P8T86_RS05020 (P8T86_04995) fdhD 874562..875364 (+) 803 Protein_1000 formate dehydrogenase accessory sulfurtransferase FdhD -
  P8T86_RS05025 (P8T86_05000) ceuB 875669..876622 (+) 954 WP_024094004.1 ABC transporter permease Machinery gene
  P8T86_RS05030 (P8T86_05005) - 876612..877565 (+) 954 WP_024094005.1 iron chelate uptake ABC transporter family permease subunit -
  P8T86_RS05035 (P8T86_05010) - 877559..878317 (+) 759 WP_023484248.1 ABC transporter ATP-binding protein -
  P8T86_RS05040 (P8T86_05015) - 878444..879361 (+) 918 WP_023484247.1 siderophore ABC transporter substrate-binding protein -
  P8T86_RS05045 (P8T86_05020) - 879585..879842 (+) 258 WP_024094007.1 YqkE family protein -
  P8T86_RS05050 (P8T86_05025) - 879873..881012 (+) 1140 WP_046655018.1 lactonase family protein -
  P8T86_RS05055 (P8T86_05030) - 881150..881266 (+) 117 Protein_1007 transposase -
  P8T86_RS05060 (P8T86_05035) - 881293..881448 (+) 156 WP_162471813.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35098.42 Da        Isoelectric Point: 10.2577

>NTDB_id=810131 P8T86_RS05025 WP_024094004.1 875669..876622(+) (ceuB) [Paenibacillus larvae strain PL006]
MKLRYLFIALVILSFASVFIGVKEVSPMDMLHLGEEQVQVILISRIPRLVSIIIAGVSMSISGLIMQQISRNKFVSPTTA
GTMDFARLGILVSIMLFTTASPLVKMLVAFIFALLGTLLFMKILKRIRFKDTIFIPLVGIMFGNVVSSITTFFAYKYDLI
QNINAWLQGDFSMIIKGRYELLYLSIPIVIIAFLYANKFTVAGMGEDFSKNLGVNYNRVVNVGLVIVALVSAVVILTVGT
IPFLGLIIPNIVSIYRGDNLRNSLPHTALLGAVFVLFCDILGRIIIFPYEVSISVTVGVIGSIIFLYLLFRRNAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=810131 P8T86_RS05025 WP_024094004.1 875669..876622(+) (ceuB) [Paenibacillus larvae strain PL006]
ATGAAACTACGATACCTTTTCATAGCGCTTGTTATCTTATCTTTCGCCTCCGTTTTCATCGGGGTAAAAGAAGTTTCCCC
GATGGATATGCTTCATCTGGGGGAAGAACAGGTCCAGGTTATTCTTATTAGCCGGATTCCCCGTCTGGTCAGTATTATCA
TCGCGGGAGTCAGTATGAGCATTAGCGGTCTTATCATGCAGCAGATCAGCCGCAACAAATTTGTCTCGCCGACTACGGCC
GGAACGATGGACTTCGCCAGGCTGGGTATTCTCGTTTCGATTATGCTGTTCACCACGGCCAGTCCACTGGTGAAGATGCT
TGTAGCTTTCATCTTTGCTTTGCTGGGGACGTTATTGTTCATGAAAATCCTTAAACGGATCAGGTTCAAGGATACGATCT
TTATCCCGCTTGTCGGCATCATGTTCGGGAATGTTGTAAGCTCGATCACAACTTTCTTTGCTTACAAATATGACTTGATT
CAGAATATCAATGCATGGCTTCAGGGTGATTTCTCAATGATCATTAAAGGGAGGTACGAGCTTTTATATCTTAGTATTCC
TATTGTGATCATTGCCTTTCTCTATGCCAACAAGTTTACTGTGGCGGGAATGGGAGAAGATTTCTCCAAAAACTTGGGTG
TAAACTATAACCGGGTTGTCAATGTTGGGCTCGTGATCGTAGCACTGGTCTCCGCAGTGGTAATCCTGACTGTAGGTACT
ATTCCGTTTCTTGGCTTGATTATTCCGAATATCGTTTCGATCTACAGGGGAGATAATCTGAGAAACAGTCTTCCCCACAC
AGCATTGCTTGGAGCGGTGTTCGTTCTTTTCTGTGACATTCTAGGCCGGATTATCATTTTCCCGTATGAGGTATCTATAA
GTGTTACGGTCGGAGTGATCGGAAGCATCATCTTCCTTTACTTACTATTTAGGAGAAACGCTTATGCATCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514