Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RO839_RS07590 Genome accession   NZ_CP135132
Coordinates   1690119..1693016 (+) Length   965 a.a.
NCBI ID   WP_057683311.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CO33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1685119..1698016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO839_RS07565 (RO839_07565) murJ 1685838..1687448 (-) 1611 WP_057683308.1 murein biosynthesis integral membrane protein MurJ -
  RO839_RS07570 (RO839_07570) rpsT 1687548..1687817 (+) 270 WP_010894866.1 30S ribosomal protein S20 -
  RO839_RS07575 (RO839_07575) obgE 1687931..1689004 (-) 1074 WP_057683309.1 GTPase ObgE -
  RO839_RS07580 (RO839_07580) rpmA 1689173..1689430 (-) 258 WP_004085949.1 50S ribosomal protein L27 -
  RO839_RS07585 (RO839_07585) rplU 1689454..1689774 (-) 321 WP_057683310.1 50S ribosomal protein L21 -
  RO839_RS07590 (RO839_07590) uvrA 1690119..1693016 (+) 2898 WP_057683311.1 excinuclease ABC subunit UvrA Machinery gene
  RO839_RS07595 (RO839_07595) - 1693140..1694039 (-) 900 WP_057683312.1 hypothetical protein -
  RO839_RS07600 (RO839_07600) - 1694584..1695363 (-) 780 WP_316664494.1 hypothetical protein -
  RO839_RS07605 (RO839_07605) - 1695475..1695648 (-) 174 WP_235443708.1 hypothetical protein -
  RO839_RS07610 (RO839_07610) guaA 1695691..1697259 (-) 1569 WP_057683313.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 965 a.a.        Molecular weight: 106939.82 Da        Isoelectric Point: 6.7478

>NTDB_id=810127 RO839_RS07590 WP_057683311.1 1690119..1693016(+) (uvrA) [Xylella fastidiosa strain CO33]
MTALIRIRGARTHNLKNLDLDLPRNTLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLSVMEKPDVDHIEGL
SPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGQPRCPEHHYPLEAQTVSQMVDHVLTLDPEQRYMLLAPVVRERK
GEHTQVFEQLRAQGFVRVRVDGELYEIDAVPTLTLRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGNGMASVQTLDT
TTATPHLFSSKYSCPVCDYSLPELEPRLFSFNAPMGACPACNGLGVTEFFDPAKVVIHPDLSLSAGAVRGWDRRNAYYFQ
LIASLAKHYTFDIDASWESLPEEIRHTILFGSGDEQINFTYLTEAGGRTKRKHRFEGIVPNLERRYRETESAAVREELAK
YVSTRTCPECGGTRLNRAARNVFVADRTLPELTVLPINDALEFFKTLRLSGWRGEIAIKIVKEIGERLGFLVDVGLDYLT
LERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNTVIVVEHDEDAIRQADHILD
IGPGAGVHGGEICAQGSLEQIMAAPRSLTGQYLSGRRRIEIPKQRHPPNATKMLHLRGACGNNLKGVNLDIPEGLFTCIT
GVSGSGKSTLINDTLFTLAANEINGASHPIAPYASVDGLELFDKVVDIDQSPIGRTPRSNPATYTGMFTPLRELFAQVPE
ARARGYSPGRFSFNVRGGRCEACEGDGLIKVEMHFLPDVYVPCDICHGKRYNRETLEIRYKGYNINDVLEMTVEDALKLF
EAVPAIARKLETLVDVGLSYLKLGQSATTLSGGEAQRVKLSKELSRRDTGRTLYILDEPTTGLHFYDIEALLAVLHKLRD
AGNTVIVIEHNLDVIKTADWVIDLGPEGGGRGGEILVAGTPETVAAHPHSHTGHFLAKLLPPKDVSNCGHRNPKEEVDIA
KTVHR

Nucleotide


Download         Length: 2898 bp        

>NTDB_id=810127 RO839_RS07590 WP_057683311.1 1690119..1693016(+) (uvrA) [Xylella fastidiosa strain CO33]
GTGACGGCCCTCATCCGTATCCGCGGCGCGCGGACACACAATCTTAAGAATTTGGATCTCGATCTACCGCGTAACACACT
GATCGTCATCACCGGCCTCTCAGGCTCTGGCAAATCATCGTTGGCATTTGACACGATCTACGCTGAAGGTCAGCGGCGCT
ATGTCGAATCACTGTCGGCCTACGCGCGGCAGTTTTTGAGCGTGATGGAAAAGCCGGATGTGGATCATATTGAAGGGCTG
TCTCCGGCTATTTCAATTGAACAAAAGTCGACCTCGCATAACCCCCGCTCCACCGTCGGTACGATCACTGAAATCTACGA
TTATTTGCGTCTGCTGTATGCACGTGTCGGACAGCCGCGCTGCCCGGAGCACCATTACCCGCTGGAAGCACAAACAGTGA
GCCAGATGGTGGATCACGTATTGACCTTGGATCCAGAGCAGCGCTACATGCTGTTGGCGCCTGTGGTACGTGAGCGCAAG
GGTGAACATACCCAAGTGTTCGAACAACTGCGTGCACAAGGCTTTGTGCGCGTGCGCGTGGATGGCGAACTGTATGAGAT
CGACGCGGTGCCAACGCTGACACTGCGTCAAAAGCATACGATTGAAGCAGTCATTGACCGTTTTCGCCCACGTGAAGACA
TCAAGCAACGTTTGGCGGAAAGCTTTGAAACGGCATTGAAGTTGGGCAACGGGATGGCTTCGGTCCAAACGCTGGACACA
ACAACAGCCACACCACACCTGTTTTCCTCTAAGTACTCCTGTCCAGTATGCGATTATTCGCTACCGGAATTAGAGCCACG
GTTGTTCTCCTTCAACGCCCCGATGGGGGCGTGCCCCGCCTGCAACGGTCTGGGAGTCACCGAGTTCTTCGACCCGGCCA
AGGTCGTCATACATCCAGATCTTTCACTGTCAGCTGGTGCTGTGCGTGGTTGGGACCGCCGCAACGCTTACTATTTTCAA
TTGATCGCTTCGCTCGCCAAGCACTATACGTTTGACATTGACGCATCATGGGAATCGCTCCCTGAAGAGATCCGTCATAC
CATCCTGTTCGGCAGTGGCGATGAGCAGATCAACTTCACCTATTTGACGGAGGCTGGAGGGCGTACCAAGCGCAAACATC
GCTTTGAAGGCATTGTGCCGAACCTAGAGCGCCGCTACCGTGAGACAGAATCCGCTGCCGTACGTGAGGAACTGGCCAAG
TACGTCAGTACGCGGACCTGCCCGGAGTGCGGCGGCACACGTCTGAACCGCGCCGCACGCAATGTATTTGTTGCCGATCG
GACGCTCCCTGAGCTGACAGTGCTGCCCATTAATGACGCATTGGAATTCTTCAAAACGCTACGCCTGTCAGGCTGGCGTG
GTGAGATCGCAATTAAAATTGTCAAAGAAATCGGGGAGCGTCTCGGCTTCCTGGTCGATGTTGGTCTGGACTACCTAACA
TTGGAGCGTAAGGCCGACACCCTCTCTGGTGGTGAAGCACAACGTATCCGCCTAGCGAGTCAGATCGGTGCTGGTCTAGT
GGGAGTGATGTATGTGCTGGACGAACCCTCCATCGGATTGCACCAGCGTGATAACGAACGCCTGCTCGGTACACTAACTC
GGTTGCGCGACCTTGGTAATACGGTGATTGTCGTTGAACACGACGAGGACGCCATCCGCCAAGCCGACCATATTCTCGAC
ATTGGTCCCGGTGCCGGTGTGCATGGTGGTGAGATCTGTGCTCAGGGGTCGTTAGAACAGATTATGGCCGCGCCGCGCTC
CTTGACTGGCCAATACTTATCCGGTCGACGCCGGATTGAAATCCCCAAACAGCGCCACCCCCCCAACGCCACGAAGATGC
TGCACCTGCGCGGCGCCTGCGGTAATAACCTTAAAGGCGTTAATCTTGACATCCCTGAGGGTCTGTTTACTTGCATTACT
GGGGTGTCCGGCTCCGGTAAATCGACGCTCATCAACGACACGTTGTTTACGTTAGCCGCAAACGAGATCAATGGTGCTTC
TCATCCCATTGCGCCGTATGCATCAGTCGATGGTCTAGAGCTGTTCGACAAAGTGGTAGACATTGATCAATCACCGATCG
GACGCACGCCACGCTCCAACCCAGCAACCTACACTGGCATGTTCACCCCGTTACGCGAGCTTTTTGCGCAGGTTCCGGAG
GCGCGCGCGCGCGGTTATTCTCCAGGACGTTTCAGCTTCAACGTGCGCGGCGGGCGCTGTGAAGCGTGTGAGGGCGACGG
GCTGATTAAGGTTGAAATGCACTTTTTACCCGACGTCTACGTGCCATGCGATATATGTCATGGCAAACGTTACAACCGTG
AGACGCTGGAAATACGATACAAGGGATATAACATCAACGACGTGCTGGAGATGACCGTTGAAGATGCCTTAAAACTGTTT
GAAGCAGTACCAGCAATTGCACGCAAGCTGGAAACTTTGGTAGATGTAGGCTTGAGCTACCTCAAACTCGGCCAGAGTGC
GACGACGCTATCAGGCGGTGAGGCGCAGCGTGTCAAATTGTCCAAAGAACTGTCACGACGCGACACCGGACGCACGCTGT
ATATCCTTGACGAACCAACCACTGGGCTGCATTTTTACGACATTGAAGCGCTGCTGGCAGTACTGCACAAACTGCGCGAT
GCAGGGAATACGGTCATCGTGATTGAGCATAATTTAGATGTGATCAAAACGGCGGATTGGGTCATTGATCTCGGCCCAGA
AGGAGGCGGACGCGGTGGTGAAATCCTGGTGGCCGGCACTCCTGAAACGGTGGCTGCGCATCCTCACTCGCATACTGGCC
ACTTCTTAGCCAAGCTGTTACCTCCTAAGGATGTATCCAACTGCGGTCATCGGAACCCTAAAGAAGAGGTTGACATTGCA
AAAACGGTACACCGTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-400)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.17

97.409

0.547
  uvrA Streptococcus pneumoniae TIGR4

56.17

97.409

0.547
  uvrA Streptococcus pneumoniae D39

56.17

97.409

0.547