Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RO839_RS01810 Genome accession   NZ_CP135132
Coordinates   448895..449557 (+) Length   220 a.a.
NCBI ID   WP_004085189.1    Uniprot ID   Q9PEE9
Organism   Xylella fastidiosa strain CO33     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443895..454557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO839_RS01795 (RO839_01795) - 444129..445370 (+) 1242 WP_020851882.1 lipoprotein-releasing ABC transporter permease subunit -
  RO839_RS01800 (RO839_01800) lolD 445363..446085 (+) 723 WP_057683420.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RO839_RS01805 (RO839_01805) comA 446433..448910 (+) 2478 WP_057683447.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RO839_RS01810 (RO839_01810) exbB 448895..449557 (+) 663 WP_004085189.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RO839_RS01815 (RO839_01815) - 449562..449999 (+) 438 WP_004089267.1 biopolymer transporter ExbD -
  RO839_RS01820 (RO839_01820) msbA 450017..451765 (+) 1749 WP_057683419.1 lipid A export permease/ATP-binding protein MsbA -
  RO839_RS01825 (RO839_01825) lpxK 451762..452781 (+) 1020 WP_057683418.1 tetraacyldisaccharide 4'-kinase -
  RO839_RS01830 (RO839_01830) - 453125..453772 (-) 648 Protein_342 hypothetical protein -
  RO839_RS01835 (RO839_01835) - 453780..454337 (-) 558 WP_057683446.1 phage tail protein I -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24000.41 Da        Isoelectric Point: 8.9727

>NTDB_id=810100 RO839_RS01810 WP_004085189.1 448895..449557(+) (exbB) [Xylella fastidiosa strain CO33]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=810100 RO839_RS01810 WP_004085189.1 448895..449557(+) (exbB) [Xylella fastidiosa strain CO33]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGGCGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATTCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGGTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PEE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441