Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   RO839_RS00450 Genome accession   NZ_CP135132
Coordinates   116584..117219 (+) Length   211 a.a.
NCBI ID   WP_057682981.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CO33     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111584..122219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO839_RS00440 (RO839_00440) - 113023..114051 (-) 1029 WP_057682979.1 right-handed parallel beta-helix repeat-containing protein -
  RO839_RS00445 (RO839_00445) - 115080..116111 (+) 1032 WP_057682980.1 nitronate monooxygenase family protein -
  RO839_RS00450 (RO839_00450) dinR/lexA 116584..117219 (+) 636 WP_057682981.1 transcriptional repressor LexA Regulator
  RO839_RS00455 (RO839_00455) recA 117401..118444 (+) 1044 WP_024748974.1 recombinase RecA Machinery gene
  RO839_RS00460 (RO839_00460) alaS 118908..121562 (+) 2655 WP_057682982.1 alanine--tRNA ligase -
  RO839_RS00465 (RO839_00465) csrA 121701..121916 (+) 216 WP_057682983.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23350.84 Da        Isoelectric Point: 6.7606

>NTDB_id=810096 RO839_RS00450 WP_057682981.1 116584..117219(+) (dinR/lexA) [Xylella fastidiosa strain CO33]
MSLSDIQQAILSLITKNINADGVSPSQTEIARAFGFKGVRAVQHHLDVLEQQGMIRRVPGQARGIRLKHLTEVDEVALAL
HSKDVLRLPVLGRVAAGQPIGADIGEDRVVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVAR
IDDEITVKLLKISKDRIRLLPRNPDFAPIEVRSDQDFAIEGLYCGLLRPNR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=810096 RO839_RS00450 WP_057682981.1 116584..117219(+) (dinR/lexA) [Xylella fastidiosa strain CO33]
ATGAGTTTGAGCGATATTCAGCAGGCAATCCTGTCATTGATTACCAAAAACATCAACGCTGATGGCGTTTCTCCTTCGCA
GACGGAGATCGCGCGTGCATTCGGCTTCAAAGGGGTTCGCGCGGTGCAGCATCACCTTGATGTATTGGAGCAACAGGGGA
TGATTCGCCGCGTCCCTGGACAGGCGCGTGGCATCCGGTTGAAGCATCTTACTGAGGTGGATGAGGTTGCGTTAGCTTTG
CATAGTAAGGATGTGTTGCGCTTGCCAGTGCTCGGCCGCGTTGCGGCTGGTCAGCCGATCGGTGCTGATATCGGTGAGGA
TCGCGTGGTGTTGTTGGATCGTGTGTTCTTCTCCCCAGCACCGGATTATCTGTTGAGGGTGCAAGGTGATTCGATGCGCG
ATGAAGGAATTTTCGATGGTGATTTGATCGGCGTACATCGTACGCAGGATGCGCATTCTGGGCAAATTGTGGTGGCGCGC
ATTGATGATGAGATTACCGTCAAATTGTTGAAGATCAGTAAAGACCGGATTCGTTTGCTACCGCGTAATCCTGACTTTGC
ACCGATTGAGGTGAGGTCAGATCAGGATTTCGCCATTGAGGGATTGTATTGCGGTTTGCTGCGCCCCAACCGGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-64)

Peptidase S24-like (Peptidase_S24)

(89-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.019

98.578

0.365