Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OPA56_RS06140 Genome accession   NZ_AP026788
Coordinates   1261055..1261570 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain IPCEC42     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256055..1266570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPA56_RS06090 (IPCEC42_11850) csrA 1256771..1256956 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  OPA56_RS06125 (IPCEC42_11860) yqaB 1258285..1258851 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  OPA56_RS06130 (IPCEC42_11870) yqaA 1258848..1259276 (+) 429 WP_001287462.1 YqaA family protein -
  OPA56_RS06135 (IPCEC42_11880) gshA 1259349..1260905 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  OPA56_RS06140 (IPCEC42_11890) luxS 1261055..1261570 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  OPA56_RS06145 (IPCEC42_11900) - 1261621..1262733 (-) 1113 WP_000638136.1 ATP-binding protein -
  OPA56_RS06150 (IPCEC42_11910) - 1262730..1263437 (-) 708 WP_001097132.1 RNA ligase family protein -
  OPA56_RS06155 (IPCEC42_11920) emrB 1263695..1265233 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  OPA56_RS06160 (IPCEC42_11930) emrA 1265250..1266422 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=81008 OPA56_RS06140 WP_001130208.1 1261055..1261570(+) (luxS) [Escherichia coli strain IPCEC42]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=81008 OPA56_RS06140 WP_001130208.1 1261055..1261570(+) (luxS) [Escherichia coli strain IPCEC42]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment