Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QN329_RS10005 Genome accession   NZ_CP135103
Coordinates   1966585..1968243 (-) Length   552 a.a.
NCBI ID   WP_000923613.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1961585..1973243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS09975 (QN329_09980) - 1962479..1963411 (+) 933 WP_000254063.1 dihydroorotate oxidase -
  QN329_RS09980 (QN329_09985) - 1963455..1963652 (-) 198 WP_001290370.1 hypothetical protein -
  QN329_RS09985 (QN329_09990) - 1963849..1964124 (-) 276 WP_001284634.1 HU family DNA-binding protein -
  QN329_RS09990 (QN329_09995) - 1964227..1964829 (-) 603 WP_000806954.1 YpmS family protein -
  QN329_RS09995 (QN329_10000) - 1964804..1965643 (-) 840 WP_001035227.1 SGNH/GDSL hydrolase family protein -
  QN329_RS10000 (QN329_10005) - 1965636..1966472 (-) 837 WP_000034838.1 DegV family protein -
  QN329_RS10005 (QN329_10010) recN 1966585..1968243 (-) 1659 WP_000923613.1 DNA repair protein RecN Machinery gene
  QN329_RS10010 (QN329_10015) - 1968255..1968728 (-) 474 WP_017647076.1 arginine repressor -
  QN329_RS10015 (QN329_10020) - 1968715..1969542 (-) 828 WP_001041037.1 TlyA family RNA methyltransferase -
  QN329_RS10020 (QN329_10025) - 1969535..1970407 (-) 873 WP_000256279.1 polyprenyl synthetase family protein -
  QN329_RS10025 (QN329_10030) - 1970407..1970622 (-) 216 WP_001280898.1 exodeoxyribonuclease VII small subunit -
  QN329_RS10030 (QN329_10035) xseA 1970600..1971940 (-) 1341 WP_016502612.1 exodeoxyribonuclease VII large subunit -
  QN329_RS10035 (QN329_10040) - 1972066..1972902 (-) 837 WP_000634978.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62499.76 Da        Isoelectric Point: 4.5358

>NTDB_id=809984 QN329_RS10005 WP_000923613.1 1966585..1968243(-) (recN) [Streptococcus agalactiae strain HU36/21]
MLLEISIKNFAIIEEISLNFETGMTVLTGETGAGKSIIIDAMNMMLGARASVEVIRHGANKAEIEGFFSVEKNQSLVQLL
EENGIELADELIIRREIFQNGRSVSRINGQMVNLSTLKAVGHYLVDIHGQHDQEELMKPNMHILMLDEFGNTEFNVIKER
YQSLFDAYRQLRKRVLDKQKNEQENKSRIEMLEFQIAEIESVALKSDEDQTLLKQRDKLMNHKNIADTLTNAYLMLDNEE
FSSLSNVRSAMNDLMALEEFDREYKDLSTNLSEAYYVIEEVTKRLGDVIDDLDFDAGLLQEIENRLDVINTITRKYGGDV
NDVLDYFDNITKEYSLLTGSEESSDALEKELKILEHDLIESANQLSLERHKLAKQLENEIKQELTELYMEKADFQVQFTK
GKFNKEGNEIVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFSRKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLAQVIAIADYQYFIEKISSDSSTVSTVRLLSYEERVEEIAKMLAGNNVTDTARTQAKELLGS

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=809984 QN329_RS10005 WP_000923613.1 1966585..1968243(-) (recN) [Streptococcus agalactiae strain HU36/21]
ATGCTTTTAGAAATTTCTATTAAGAATTTCGCTATTATCGAAGAAATTTCACTTAATTTTGAAACAGGAATGACTGTTTT
AACTGGTGAGACTGGTGCAGGGAAATCTATCATTATTGATGCTATGAATATGATGTTAGGAGCCCGTGCTAGTGTTGAAG
TGATTCGCCATGGTGCTAACAAAGCAGAAATTGAAGGATTTTTCTCTGTTGAAAAAAATCAATCATTAGTCCAATTATTG
GAAGAAAATGGCATTGAATTAGCAGATGAATTAATTATTCGCCGAGAAATCTTTCAAAATGGGCGCAGCGTTAGTCGAAT
TAATGGGCAAATGGTGAATTTGTCAACACTAAAAGCTGTGGGGCATTATTTAGTAGACATTCATGGTCAGCATGACCAAG
AGGAACTAATGAAACCTAACATGCACATTCTGATGTTAGATGAATTTGGTAATACAGAATTTAATGTCATAAAAGAACGT
TATCAAAGTCTTTTTGATGCTTATCGTCAGCTTCGTAAACGCGTATTGGATAAGCAAAAAAATGAACAAGAGAATAAATC
ACGTATTGAAATGCTAGAATTTCAAATAGCAGAAATTGAGTCTGTAGCCCTTAAATCAGATGAAGACCAAACGCTACTCA
AGCAACGTGATAAATTAATGAATCATAAGAATATTGCAGATACTTTGACAAATGCATATCTTATGTTAGATAACGAAGAG
TTTTCAAGTTTATCGAATGTTCGTTCTGCAATGAATGACCTTATGGCTTTAGAAGAATTTGATCGAGAATATAAAGATCT
TTCCACCAATCTTTCAGAAGCTTACTACGTTATTGAAGAAGTTACTAAACGTTTAGGTGACGTTATCGATGATTTAGATT
TTGACGCTGGTTTACTACAAGAAATTGAAAATAGACTAGATGTTATTAACACAATAACGCGAAAATATGGCGGTGATGTG
AATGATGTTTTAGACTATTTTGATAACATTACTAAAGAATATAGTCTATTGACAGGTAGTGAAGAGTCCTCAGATGCTTT
AGAAAAAGAATTAAAGATTTTAGAACACGATTTGATTGAATCAGCAAATCAATTAAGTTTAGAGCGCCATAAGCTAGCTA
AACAATTGGAAAATGAAATCAAACAAGAATTAACAGAGCTTTATATGGAGAAAGCTGATTTCCAAGTTCAATTTACAAAA
GGAAAATTTAATAAAGAAGGGAACGAAATCGTTGAATTTTATATTTCAACGAATCCCGGAGAGGGCTTTAAGCCATTGGT
AAAAGTGGCTTCAGGAGGAGAGTTATCTCGATTGATGTTAGCTATTAAATCTGCTTTTTCACGTAAGGAAGATAAAACTT
CCATTGTATTTGATGAGGTGGATACAGGAGTTTCTGGTCGCGTGGCCCAGGCTATCGCTCAAAAAATTCACAAGATTGGT
AGTCATGGACAAGTTTTAGCAATTTCTCATTTAGCTCAGGTTATTGCAATAGCGGATTACCAATATTTTATTGAAAAAAT
TTCCAGTGACTCTTCAACAGTTTCAACGGTAAGGCTTTTAAGCTATGAAGAACGTGTAGAAGAAATCGCTAAAATGTTGG
CAGGAAACAATGTAACAGACACTGCACGTACTCAAGCTAAAGAATTACTTGGTAGTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.563

100

0.447