Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QN329_RS06950 Genome accession   NZ_CP135103
Coordinates   1325383..1327581 (+) Length   732 a.a.
NCBI ID   WP_161515361.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1320383..1332581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS06920 (QN329_06935) - 1320506..1320682 (-) 177 WP_000239229.1 DUF3042 family protein -
  QN329_RS06925 (QN329_06940) miaA 1320793..1321683 (+) 891 WP_001226485.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  QN329_RS06930 (QN329_06945) hflX 1321774..1323012 (+) 1239 WP_000573351.1 GTPase HflX -
  QN329_RS06935 (QN329_06950) - 1323005..1323652 (+) 648 WP_000568317.1 hypothetical protein -
  QN329_RS06940 (QN329_06955) rnz 1323694..1324623 (+) 930 WP_410531325.1 ribonuclease Z -
  QN329_RS06945 (QN329_06960) - 1324625..1325386 (+) 762 WP_000124580.1 SDR family NAD(P)-dependent oxidoreductase -
  QN329_RS06950 (QN329_06965) recJ 1325383..1327581 (+) 2199 WP_161515361.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QN329_RS06955 (QN329_06970) - 1327733..1330297 (+) 2565 WP_001247529.1 GBS Bsp-like repeat-containing protein -
  QN329_RS06960 (QN329_06975) - 1330420..1330938 (+) 519 WP_000365343.1 adenine phosphoribosyltransferase -
  QN329_RS06965 (QN329_06980) - 1331056..1331736 (+) 681 WP_000221657.1 DnaD domain-containing protein -
  QN329_RS06970 (QN329_06985) - 1331840..1332523 (+) 684 WP_000365677.1 tRNA (adenine(22)-N(1))-methyltransferase -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 82307.98 Da        Isoelectric Point: 4.5370

>NTDB_id=809953 QN329_RS06950 WP_161515361.1 1325383..1327581(+) (recJ) [Streptococcus agalactiae strain HU36/21]
MISAKYSWVLNNQKPDAGFFEASKKEKISEVVASLIYSRGIKTSAELHHFLQTNLENLHDPYLLNDMDKAVNRIRRAIEN
NETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDGYGPNESVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQ
NQGVDVVVTDHHSMPADLPCAYAIIHPEHPDANYPFPYLAGCGVAFKVACALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLDDPNPAIELLTGFDDEESQAIAQMIDQKN
EERKEIVQTIFDQAMQMLDQTKPVQVLAKENWHPGVLGIVAGRILERTGQPVIVLNIEDGIAKGSARSVEALDIFQAFDQ
HRELFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDTVRDFEKLAPFGMDNKKP
VFLLKDFKVSQARVMGQNGAHLKLKLEQDGQALDLVAFNMGSQLQEFQQAQHLELTVTLSVNQWNGATTLQLMLEDARVD
GIQLFDIRSKASSLPHGVPILSQEEQSKEVILLTVPDHPQELKQMTQGKQFDAIYFKNEIPKNYFISGYGTRDQFASLYK
TIYQFPEFDVRYKLKELSSYLHIPDILLIKMIQIFEELHFVTITEGIMTVNKEAEKRDISESQIYQELKETVKFQELMAL
GTPKEIYDFMMS

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=809953 QN329_RS06950 WP_161515361.1 1325383..1327581(+) (recJ) [Streptococcus agalactiae strain HU36/21]
ATGATATCTGCTAAGTATAGTTGGGTCCTCAATAACCAAAAGCCAGACGCTGGCTTTTTTGAGGCTTCAAAAAAAGAAAA
GATAAGTGAAGTGGTGGCTTCCTTAATTTATTCGCGAGGTATTAAGACATCAGCGGAATTACATCATTTTTTACAAACTA
ATTTGGAAAATCTCCATGATCCTTATTTGTTAAATGATATGGATAAAGCTGTTAATCGTATTAGACGAGCTATTGAAAAT
AATGAAACTATTTTAGTTTATGGAGACTATGATGCTGATGGAATGACATCAGCATCAATCATGAAAGAAGCTTTAGATAT
GATGGGAGCTGAAGTCCAGGTTTATCTCCCAAATCGTTTTACAGATGGTTACGGTCCCAATGAAAGTGTTTATAAATATT
TTATTGAACAACAAGATGTTTCATTAATCATTACGGTTGATAATGGTGTGGCAGGGCATGAAGCAATCGCATATGCTCAA
AATCAAGGTGTGGACGTGGTAGTTACTGATCATCACAGTATGCCAGCAGATTTACCTTGTGCTTATGCTATTATTCACCC
AGAACATCCTGATGCTAATTATCCATTTCCTTATTTAGCAGGGTGTGGTGTTGCTTTCAAAGTAGCTTGTGCTCTCTTAG
AAACAATCCCGACAGAAATGTTGGATTTGGTTGCTATTGGGACGATTGCAGATATGGTTAGCCTAACTGATGAAAATCGT
ATCATGGTAAAAGCTGGACTTGAAGTTATGAAAGATAGTGAAAGAATAGGCTTACAGGAGCTAATATCTTTATCAAATAT
TGATTTAAAAACACTAAATGAAGAAACTATTGGATTTAAAATTGCTCCACAATTAAACGCTTTAGGAAGACTTGATGACC
CTAATCCAGCTATTGAATTACTGACAGGGTTTGATGATGAAGAATCTCAAGCAATAGCCCAAATGATTGATCAAAAAAAT
GAAGAGCGCAAAGAAATCGTTCAAACTATCTTTGACCAAGCTATGCAAATGCTTGATCAAACAAAGCCTGTACAAGTTTT
AGCAAAAGAAAATTGGCATCCAGGGGTTTTAGGTATTGTGGCGGGTCGTATTTTAGAGAGAACTGGACAACCTGTTATTG
TTTTGAATATTGAAGATGGTATTGCTAAAGGAAGTGCCAGAAGTGTAGAAGCACTTGATATTTTTCAAGCTTTTGACCAG
CATCGAGAATTATTCATTGCTTTTGGAGGTCACAGCGGAGCAGCAGGCATGACTTTAGAGGAAAGTAAGGTGGGTGATCT
TTCTCAAGTTTTGTGTGACTATATCTCTAAAAAACAATTGGACATGAGTCAGAAAAAAACTCTGACAATTGATAGTGAGC
TACGTTTTGACGAACTTAGTTTAGACACTGTTAGAGATTTTGAAAAGTTAGCGCCATTTGGAATGGATAATAAAAAGCCA
GTCTTTTTGTTAAAAGATTTTAAAGTGAGTCAAGCCAGAGTCATGGGGCAAAACGGTGCTCATCTGAAATTAAAACTAGA
ACAAGATGGACAAGCACTTGATTTGGTAGCATTTAATATGGGGAGTCAACTACAAGAGTTTCAACAAGCACAACATTTGG
AGTTAACTGTCACTTTATCTGTTAATCAATGGAATGGTGCCACAACCCTACAATTAATGTTGGAGGATGCGCGTGTAGAT
GGTATTCAATTATTTGATATTAGAAGCAAAGCAAGTAGCCTACCTCATGGAGTGCCAATCCTGTCTCAAGAAGAGCAGAG
CAAAGAAGTTATCCTTTTGACTGTTCCCGATCATCCACAAGAATTAAAACAAATGACTCAAGGTAAACAGTTTGATGCCA
TCTATTTTAAAAATGAGATACCAAAAAATTATTTTATATCTGGTTATGGTACACGTGATCAGTTTGCTAGTTTATATAAA
ACAATATATCAATTCCCAGAATTTGACGTTCGTTATAAGTTAAAAGAGCTCAGTTCCTACCTTCATATCCCTGATATTTT
ATTAATTAAAATGATTCAAATTTTTGAAGAACTACATTTTGTTACGATTACAGAGGGGATTATGACAGTCAATAAAGAAG
CAGAAAAGCGAGATATCTCTGAGAGTCAAATTTATCAAGAATTAAAAGAGACAGTTAAGTTTCAAGAATTAATGGCTTTA
GGGACACCTAAAGAAATATATGATTTTATGATGAGTTGA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-433)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-726)

RecJ OB domain (RecJ_OB)

(450-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

64.858

100

0.653
  recJ Bacillus subtilis subsp. subtilis str. 168

36.01

100

0.38