Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   QN329_RS06620 Genome accession   NZ_CP135103
Coordinates   1256305..1256745 (+) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain HU36/21     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251305..1261745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS06600 (QN329_06625) - 1251422..1251931 (-) 510 WP_000870953.1 HdeD family acid-resistance protein -
  QN329_RS06605 (QN329_06630) gdhA 1252099..1253448 (+) 1350 WP_000200443.1 NADP-specific glutamate dehydrogenase -
  QN329_RS06610 (QN329_06635) - 1253518..1253928 (+) 411 WP_000594937.1 peptide deformylase -
  QN329_RS06615 (QN329_06640) - 1253965..1256037 (-) 2073 WP_161515352.1 surface-anchored 5'-nucleotidase -
  QN329_RS06620 (QN329_06645) rcrR 1256305..1256745 (+) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  QN329_RS06625 (QN329_06650) rcrP 1256792..1258609 (+) 1818 WP_000481824.1 ABC transporter ATP-binding protein Regulator
  QN329_RS06630 (QN329_06655) rcrQ 1258599..1260353 (+) 1755 WP_000851086.1 ABC transporter ATP-binding protein Regulator
  QN329_RS06635 (QN329_06660) - 1260461..1261087 (+) 627 WP_000449638.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=809947 QN329_RS06620 WP_000431168.1 1256305..1256745(+) (rcrR) [Streptococcus agalactiae strain HU36/21]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=809947 QN329_RS06620 WP_000431168.1 1256305..1256745(+) (rcrR) [Streptococcus agalactiae strain HU36/21]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATTTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411