Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   QN329_RS04710 Genome accession   NZ_CP135103
Coordinates   875008..877836 (+) Length   942 a.a.
NCBI ID   WP_001152951.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 870008..882836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS04685 (QN329_04715) rpsF 871992..872279 (+) 288 WP_001151773.1 30S ribosomal protein S6 -
  QN329_RS04690 (QN329_04720) ssbA 872291..872782 (+) 492 WP_000609584.1 single-stranded DNA-binding protein Machinery gene
  QN329_RS04695 (QN329_04725) rpsR 872827..873066 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  QN329_RS04700 (QN329_04730) - 873236..874180 (+) 945 WP_000812124.1 magnesium transporter CorA family protein -
  QN329_RS04705 (QN329_04735) - 874205..874876 (+) 672 WP_000174846.1 DUF1129 domain-containing protein -
  QN329_RS04710 (QN329_04740) uvrA 875008..877836 (+) 2829 WP_001152951.1 excinuclease ABC subunit UvrA Machinery gene
  QN329_RS04715 (QN329_04745) - 878172..879671 (+) 1500 WP_017647044.1 MDR family MFS transporter -
  QN329_RS04720 (QN329_04750) - 879673..880389 (+) 717 WP_000584726.1 DUF4811 domain-containing protein -
  QN329_RS04725 (QN329_04755) - 880489..881556 (+) 1068 WP_000505336.1 M24 family metallopeptidase -
  QN329_RS04730 (QN329_04760) - 881568..882020 (+) 453 WP_001081097.1 deoxycytidylate deaminase -
  QN329_RS04735 - 882063..882295 (+) 233 Protein_860 type VII secretion protein EsaA -

Sequence

Protein


Download         Length: 942 a.a.        Molecular weight: 104149.52 Da        Isoelectric Point: 6.4367

>NTDB_id=809936 QN329_RS04710 WP_001152951.1 875008..877836(+) (uvrA) [Streptococcus agalactiae strain HU36/21]
MQDKLMIRGARAHNLKNISVDIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCINGHGAITASSVEQIVDKVLALPERTKMQILAPIIRRKK
GQHKSTFEKIQKDGYVRVRIDGDIYDVTEVPELSKSKMHNIDIVVDRLINKEGIRSRLFDSVEAALRLSDGYVVIDTMDG
NELLFSEHYSCPECGFTVPELEPRLFSFNAPFGSCPTCDGLGIKLEVDIDLVIPDKSKTLREGALVPWNPISSNYYPTML
EQAMTQFGVDMDTPFEKLSKAEKDLALYGSGEREFHFHYINDFGGERNIDLPFEGVVNNINRRYHETNSDYTRNVMREYM
NELKCNTCHGYRLNDQALCVRVGGEEGLNIGQVSDLSIADHLELLETLRLSSNEQLIARPIIKEIHDRLSFLNNVGLNYL
NLSRSAGTLSGGESQRIRLATQIGSNLSGVLYVLDEPSIGLHQRDNDRLIDSLKKMRDLGNTLIVVEHDEDTMMAADWLI
DVGPGAGAFGGEIVASGTPKQVAKNTKSITGQYLSGKKVIPVPSERRVGNGRFLEIKGAAENNLQNLDVKFPLGKFIAVT
GVSGSGKSTLINSILKKAVAQKLNRNSDKPGKYVSLEGIEYVDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCESCSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVHYKEKNIAQILDMTVNDAVTFF
AAIPKIARKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHADDIARLLKVLDRFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGIGGGQIVAIGTPEEVAENPKSYTGYYLKEKLAR

Nucleotide


Download         Length: 2829 bp        

>NTDB_id=809936 QN329_RS04710 WP_001152951.1 875008..877836(+) (uvrA) [Streptococcus agalactiae strain HU36/21]
ATGCAAGATAAATTAATGATAAGAGGAGCAAGAGCTCACAATTTAAAAAATATAAGTGTCGACATTCCACGAGACAAGTT
AGTTGTCGTTACGGGACTATCAGGATCAGGTAAGTCTAGTTTGGCCTTTGACACTATCTATGCAGAAGGACAACGTCGTT
ACGTTGAAAGTCTTTCTGCTTACGCGCGCCAATTTTTGGGAAATATGGAAAAGCCTGATGTAGATTCTATTGATGGCCTT
AGTCCAGCTATTTCTATTGATCAGAAAACAACAAGTAAGAATCCTCGCTCTACTGTTGGGACTGTAACAGAAATTAACGA
TTATTTACGTTTGCTTTATGCTCGTGTTGGAACTCCATATTGTATCAATGGTCACGGAGCCATCACAGCATCTTCTGTAG
AGCAAATTGTGGATAAGGTACTAGCGCTTCCAGAGCGAACAAAGATGCAAATTTTAGCCCCAATTATACGTCGAAAAAAA
GGACAACACAAATCAACATTTGAGAAAATACAAAAAGATGGTTACGTTCGTGTTCGTATTGATGGTGATATTTACGATGT
TACTGAAGTGCCTGAATTATCAAAAAGTAAGATGCACAATATTGATATTGTAGTAGATCGATTAATTAATAAAGAGGGCA
TTCGTTCCCGCTTATTTGATTCCGTTGAAGCGGCTCTACGTTTGTCGGATGGTTATGTCGTTATTGATACAATGGATGGC
AATGAGTTATTGTTTTCAGAGCATTATTCTTGTCCTGAATGTGGTTTTACTGTTCCTGAATTAGAGCCACGCCTTTTTTC
TTTTAATGCTCCCTTTGGTTCTTGTCCGACCTGTGATGGCTTAGGAATTAAGTTAGAAGTAGATATAGATTTGGTTATTC
CAGATAAAAGCAAGACCCTTAGAGAAGGGGCCTTAGTTCCTTGGAATCCAATTTCATCAAATTATTATCCAACGATGCTA
GAGCAAGCTATGACTCAATTTGGTGTTGATATGGATACGCCATTTGAAAAATTAAGCAAGGCGGAGAAGGATCTAGCTCT
ATATGGTTCAGGCGAACGAGAGTTCCATTTCCATTATATTAACGATTTTGGAGGTGAGAGAAATATTGATTTGCCTTTTG
AAGGGGTTGTCAATAATATTAATCGTCGTTACCATGAAACTAATAGCGATTACACACGCAATGTTATGCGAGAATATATG
AACGAGCTAAAATGTAACACTTGTCATGGTTATCGTCTAAATGATCAAGCACTTTGCGTAAGAGTTGGGGGAGAAGAAGG
TCTTAATATTGGCCAAGTCTCAGATTTATCGATAGCAGACCATTTAGAACTTTTAGAAACGTTGCGTTTATCTTCAAATG
AACAATTAATTGCTCGACCAATTATCAAAGAAATCCATGACCGCCTAAGCTTCTTAAATAATGTTGGGCTTAATTATTTA
AATCTGTCACGTTCTGCAGGAACGCTTTCCGGGGGCGAGAGTCAACGTATTCGTTTGGCTACTCAAATTGGGTCTAATTT
ATCAGGTGTCCTTTATGTACTTGATGAACCGTCCATTGGACTTCATCAGCGAGACAATGACCGTTTGATTGATAGTCTTA
AGAAAATGCGTGATTTGGGTAATACGCTTATTGTTGTTGAACATGATGAAGATACAATGATGGCAGCTGATTGGTTAATC
GATGTGGGACCTGGCGCTGGTGCGTTTGGTGGTGAGATTGTGGCCTCTGGCACACCGAAGCAAGTAGCTAAAAATACTAA
ATCTATTACAGGACAATATTTGTCAGGTAAGAAAGTGATTCCTGTACCATCTGAACGAAGAGTAGGCAATGGTCGCTTTT
TAGAAATCAAAGGTGCGGCAGAAAACAACCTACAAAATTTAGATGTCAAGTTCCCTCTCGGTAAATTTATTGCCGTAACT
GGTGTCTCAGGTTCTGGAAAATCAACCTTAATTAATAGTATTTTGAAAAAAGCTGTTGCGCAGAAGCTTAACCGTAACTC
AGATAAACCAGGTAAATATGTTTCTTTAGAAGGCATTGAATATGTTGATCGATTGATTGATATTGACCAAAGTCCAATTG
GTCGGACTCCACGTTCTAATCCCGCAACCTATACAGGTGTTTTTGATGATATTCGTGATCTTTTTGCTCAAACTAATGAG
GCAAAAATTCGAGGTTATAAAAAAGGACGCTTCTCATTTAACGTCAAAGGTGGACGTTGTGAGTCTTGTTCTGGCGATGG
TATCATCAAAATTGAGATGCATTTTTTACCAGATGTCTACGTTCCTTGTGAAGTATGCCATGGCACGCGCTATAATAGTG
AGACTCTGGAAGTACATTACAAAGAAAAAAATATTGCACAAATTCTTGATATGACAGTGAATGATGCAGTTACATTTTTT
GCAGCTATTCCTAAAATTGCTCGTAAGTTACAGACTATTAAGGATGTTGGTTTGGGATATGTCACTTTGGGGCAACCAGC
TACAACCTTATCAGGAGGAGAAGCTCAGCGAATGAAGCTGGCAAGTGAATTACATAAGCGTTCGACAGGTAAGAGTCTTT
ATATATTAGACGAACCAACAACGGGGCTTCATGCAGATGATATTGCTCGTTTACTTAAGGTTTTGGATCGTTTTGTAGAT
GATGGTAATACAGTGCTTGTTATTGAGCATAACCTTGATGTTATTAAAACTGCTGACCACATTATTGATCTTGGCCCTGA
AGGAGGTATTGGTGGCGGACAAATTGTAGCTATCGGAACACCAGAAGAAGTTGCTGAAAATCCTAAATCCTATACAGGAT
ATTATTTAAAAGAGAAGTTAGCAAGATAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(132-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

85.638

99.788

0.855
  uvrA Streptococcus pneumoniae TIGR4

85.638

99.788

0.855
  uvrA Streptococcus pneumoniae D39

85.638

99.788

0.855