Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QN325_RS01820 Genome accession   NZ_CP135101
Coordinates   332605..333366 (-) Length   253 a.a.
NCBI ID   WP_001266269.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU13/21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 327605..338366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN325_RS01800 (QN325_01800) purC 329516..330220 (-) 705 WP_001064659.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  QN325_RS01805 (QN325_01805) - 330344..330583 (-) 240 WP_000085641.1 phosphopantetheine-binding protein -
  QN325_RS01810 (QN325_01810) plsX 330594..331586 (-) 993 WP_000717407.1 phosphate acyltransferase PlsX -
  QN325_RS01815 (QN325_01815) - 331664..332542 (-) 879 WP_000420124.1 CPBP family intramembrane glutamic endopeptidase -
  QN325_RS01820 (QN325_01820) recO 332605..333366 (-) 762 WP_001266269.1 DNA repair protein RecO Machinery gene
  QN325_RS01825 (QN325_01825) - 333356..334531 (-) 1176 WP_000171457.1 pyridoxal phosphate-dependent aminotransferase -
  QN325_RS01830 (QN325_01830) - 334639..335607 (-) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  QN325_RS01835 (QN325_01835) - 335731..337074 (-) 1344 WP_000746079.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29668.10 Da        Isoelectric Point: 6.2989

>NTDB_id=809707 QN325_RS01820 WP_001266269.1 332605..333366(-) (recO) [Streptococcus agalactiae strain HU13/21]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=809707 QN325_RS01820 WP_001266269.1 332605..333366(-) (recO) [Streptococcus agalactiae strain HU13/21]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGAAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTATACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.113

98.024

0.628