Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P6M73_RS01840 Genome accession   NZ_CP120965
Coordinates   400582..401991 (+) Length   469 a.a.
NCBI ID   WP_277854460.1    Uniprot ID   -
Organism   Proteiniclasticum sp. QWL-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 395582..406991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6M73_RS01825 (P6M73_01825) - 397878..398744 (-) 867 WP_277854457.1 polyphosphate kinase 2 family protein -
  P6M73_RS01830 (P6M73_01830) - 398799..399626 (-) 828 WP_277854458.1 HAD family hydrolase -
  P6M73_RS01835 (P6M73_01835) nagB 399830..400582 (+) 753 WP_277854459.1 glucosamine-6-phosphate deaminase -
  P6M73_RS01840 (P6M73_01840) radA 400582..401991 (+) 1410 WP_277854460.1 DNA repair protein RadA Machinery gene
  P6M73_RS01845 (P6M73_01845) - 402224..403324 (+) 1101 WP_277854461.1 PIN/TRAM domain-containing protein -
  P6M73_RS01850 (P6M73_01850) ispD 403511..404194 (+) 684 WP_277854462.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  P6M73_RS01855 (P6M73_01855) - 404463..405578 (+) 1116 WP_277854463.1 hypothetical protein -
  P6M73_RS01860 (P6M73_01860) - 405668..406753 (+) 1086 WP_277854464.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 51213.05 Da        Isoelectric Point: 7.2635

>NTDB_id=809652 P6M73_RS01840 WP_277854460.1 400582..401991(+) (radA) [Proteiniclasticum sp. QWL-01]
MAKQKSVYVCAQCGYESAKWLGRCPDCNSWNSFTEEVKVAKEAAKMVKSKGISAQNMPRLVGEIESSEKARLDTGLPELN
RVLGGGLIKGSLTLISGDPGIGKSTLLLQCAGSIANQYGKVLYVSGEESEEQIKMRADRLNIRTDQLYVVSETQISVVEE
HIRTLNPVFCIIDSIQTLFSDQLTSAPGSVSQVRECSSELMRLGKTNQLPLFIVAHVTKAGDLAGPRVLEHMVDTVLSFE
GERTGDLRILRTVKNRFGTTSEIGVFEMREEGLMEVYDPSRLFLEETPGEGTMVIGIMEGTRPILVQVQSLVAETKIVMP
RRTAVGLDTTRLNMLLAVLEKKVRVPFYASDVYVNVVGGLHIEGTGADLGLALSLISSAKTREIKVSRAVAVGEIGLTGE
VRPVSKAERVIAEAAKLGFEHAIISSRQQIRKVPEGIRLIRVATVREAYEELFGAAKRGKRNSEDSESV

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=809652 P6M73_RS01840 WP_277854460.1 400582..401991(+) (radA) [Proteiniclasticum sp. QWL-01]
ATGGCAAAGCAGAAATCAGTCTATGTCTGTGCCCAGTGCGGTTATGAGTCCGCCAAGTGGCTGGGTCGCTGTCCCGACTG
CAACAGCTGGAATTCCTTCACCGAAGAAGTGAAGGTTGCGAAAGAAGCTGCCAAAATGGTGAAATCCAAAGGAATTAGCG
CTCAGAATATGCCCCGGCTGGTGGGGGAGATTGAGTCCTCGGAAAAAGCCCGGCTGGACACGGGATTGCCGGAGCTGAAC
CGGGTACTGGGCGGTGGCCTGATCAAAGGATCCCTGACCCTGATCTCAGGAGACCCCGGCATCGGAAAATCCACGCTGCT
TCTGCAGTGTGCCGGTTCCATCGCAAATCAGTATGGCAAAGTTCTCTATGTTTCAGGCGAGGAGTCGGAGGAACAGATCA
AAATGCGTGCGGATCGTCTGAATATCCGGACGGATCAGCTGTACGTCGTCTCAGAAACCCAGATTTCAGTGGTGGAGGAG
CATATCCGTACCCTGAATCCAGTGTTCTGCATCATTGACTCCATCCAGACCCTGTTCTCGGATCAGCTGACTTCAGCGCC
GGGCAGCGTGTCGCAGGTCCGGGAATGCTCTTCGGAGCTGATGCGCCTGGGCAAGACCAACCAGCTCCCCCTGTTTATTG
TAGCCCATGTCACCAAAGCAGGAGATCTGGCTGGCCCGCGTGTGCTTGAACACATGGTGGATACCGTTCTGTCCTTTGAA
GGCGAACGGACCGGTGATCTGCGCATCCTGCGCACCGTCAAGAACCGCTTTGGCACCACCTCTGAAATCGGGGTATTTGA
AATGCGGGAAGAAGGATTGATGGAAGTTTATGATCCCTCCCGCCTCTTCCTGGAAGAAACTCCGGGCGAGGGGACCATGG
TGATTGGAATCATGGAAGGAACCCGGCCGATCTTAGTGCAGGTTCAGTCCCTGGTGGCGGAAACCAAAATTGTGATGCCG
CGGCGCACTGCGGTCGGGCTGGATACCACCCGACTCAACATGCTGCTGGCCGTCCTGGAGAAAAAAGTCCGGGTGCCGTT
CTACGCCAGCGATGTCTATGTCAATGTGGTGGGAGGACTCCATATTGAAGGAACCGGTGCCGACCTTGGCCTTGCCCTGT
CGCTTATTTCCTCTGCCAAAACCAGGGAAATCAAGGTTTCACGGGCCGTGGCAGTCGGTGAAATTGGTCTGACGGGGGAG
GTGCGGCCCGTATCCAAGGCGGAACGCGTCATCGCCGAAGCCGCCAAACTGGGATTCGAACATGCCATCATTTCTTCCAG
ACAGCAGATTCGCAAAGTCCCGGAAGGCATTCGTCTGATTCGGGTTGCGACGGTTCGAGAAGCTTATGAAGAGCTGTTTG
GCGCAGCCAAACGAGGCAAACGGAATTCAGAGGATTCAGAATCGGTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-221)

Subunit ChlI of Mg-chelatase (ChlI)

(314-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.437

97.655

0.493
  radA Streptococcus mitis NCTC 12261

48.578

97.441

0.473
  radA Streptococcus mitis SK321

48.578

97.441

0.473
  radA Streptococcus pneumoniae TIGR4

48.465

97.228

0.471
  radA Streptococcus pneumoniae R6

48.465

97.228

0.471
  radA Streptococcus pneumoniae Rx1

48.465

97.228

0.471
  radA Streptococcus pneumoniae D39

48.465

97.228

0.471