Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   HT085_RS00495 Genome accession   NZ_AP023069
Coordinates   105661..106206 (-) Length   181 a.a.
NCBI ID   WP_003687351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM19854     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 100661..111206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT085_RS00485 (TUM19854C_00860) - 101667..102179 (-) 513 WP_003687349.1 shikimate kinase -
  HT085_RS00490 (TUM19854C_00870) pilQ 103447..105642 (-) 2196 WP_003690569.1 type IV pilus secretin PilQ Machinery gene
  HT085_RS00495 (TUM19854C_00880) pilP 105661..106206 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  HT085_RS00500 (TUM19854C_00890) pilO 106224..106871 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  HT085_RS00505 (TUM19854C_00900) pilN 106872..107471 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  HT085_RS00510 (TUM19854C_00910) - 107474..108589 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  HT085_RS00515 (TUM19854C_00920) - 108741..111137 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence


Protein


Download         Length: 181 a.a.        Molecular weight: 20067.60 Da        Isoelectric Point: 4.7529

>NTDB_id=80965 HT085_RS00495 WP_003687351.1 105661..106206(-) (pilP) [Neisseria gonorrhoeae strain TUM19854]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=80965 HT085_RS00495 WP_003687351.1 105661..106206(-) (pilP) [Neisseria gonorrhoeae strain TUM19854]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains


Predicted by InterproScan.

(22-163)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983


Multiple sequence alignment