Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P4G50_RS19535 Genome accession   NZ_CP120958
Coordinates   3852936..3853370 (-) Length   144 a.a.
NCBI ID   WP_167316602.1    Uniprot ID   -
Organism   Bacillus cereus strain SCBCM001     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3847936..3858370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4G50_RS19520 - 3849112..3849669 (+) 558 WP_000062067.1 PadR family transcriptional regulator -
  P4G50_RS19525 metE 3850183..3852471 (+) 2289 WP_001007608.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  P4G50_RS19530 comJ 3852510..3852899 (-) 390 WP_000424030.1 competence protein ComJ -
  P4G50_RS19535 nucA/comI 3852936..3853370 (-) 435 WP_167316602.1 DNA-entry nuclease Machinery gene
  P4G50_RS19540 - 3853597..3854346 (+) 750 WP_000388471.1 DUF3967 domain-containing protein -
  P4G50_RS19545 kinB 3854385..3855659 (-) 1275 WP_167316601.1 sporulation sensor histidine kinase KinB -
  P4G50_RS19550 - 3855970..3856170 (+) 201 WP_000929278.1 hypothetical protein -
  P4G50_RS19555 - 3856293..3857456 (+) 1164 WP_000434582.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16044.39 Da        Isoelectric Point: 8.4331

>NTDB_id=809631 P4G50_RS19535 WP_167316602.1 3852936..3853370(-) (nucA/comI) [Bacillus cereus strain SCBCM001]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLASYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=809631 P4G50_RS19535 WP_167316602.1 3852936..3853370(-) (nucA/comI) [Bacillus cereus strain SCBCM001]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCATCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGCGGAGCAGGTTCTTGGGTAGGGAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549