Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P4G50_RS06615 Genome accession   NZ_CP120958
Coordinates   1277189..1277512 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain SCBCM001     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1272189..1282512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4G50_RS06590 - 1272484..1273770 (+) 1287 WP_000247030.1 D-alanyl-D-alanine carboxypeptidase family protein -
  P4G50_RS06595 - 1273961..1274530 (+) 570 WP_000767792.1 signal peptidase I -
  P4G50_RS06600 - 1274591..1275178 (+) 588 WP_000172852.1 CalY family protein -
  P4G50_RS06605 - 1275313..1276137 (+) 825 WP_167316545.1 DUF4047 domain-containing protein -
  P4G50_RS06610 calY 1276523..1277116 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  P4G50_RS06615 sinR 1277189..1277512 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  P4G50_RS06620 - 1277592..1277726 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  P4G50_RS06625 inhA1 1278069..1280459 (+) 2391 WP_001035936.1 M6 family metalloprotease immune inhibitor InhA1 -
  P4G50_RS06630 - 1280631..1281998 (+) 1368 WP_000028375.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=809619 P4G50_RS06615 WP_000578885.1 1277189..1277512(-) (sinR) [Bacillus cereus strain SCBCM001]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=809619 P4G50_RS06615 WP_000578885.1 1277189..1277512(-) (sinR) [Bacillus cereus strain SCBCM001]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692