Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PYR84_RS29485 Genome accession   NZ_CP120956
Coordinates   6536069..6537685 (-) Length   538 a.a.
NCBI ID   WP_016454603.1    Uniprot ID   A0AAX3SLT0
Organism   Delftia tsuruhatensis strain Ery-6A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6531069..6542685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYR84_RS29470 (PYR84_29470) - 6532032..6532529 (-) 498 WP_046239904.1 hypothetical protein -
  PYR84_RS29475 (PYR84_29475) - 6532586..6533725 (-) 1140 WP_013804750.1 slipin family protein -
  PYR84_RS29480 (PYR84_29480) rtcR 6534422..6536047 (+) 1626 WP_016454604.1 RNA repair transcriptional activator RtcR -
  PYR84_RS29485 (PYR84_29485) rpoN/rpoN1 6536069..6537685 (-) 1617 WP_016454603.1 RNA polymerase factor sigma-54 Machinery gene
  PYR84_RS29490 (PYR84_29490) lptB 6537740..6538537 (-) 798 WP_016450697.1 LPS export ABC transporter ATP-binding protein -
  PYR84_RS29495 (PYR84_29495) lptA 6538534..6539196 (-) 663 WP_277849155.1 lipopolysaccharide transport periplasmic protein LptA -
  PYR84_RS29500 (PYR84_29500) - 6539369..6540019 (-) 651 WP_016450695.1 thiol:disulfide interchange protein DsbA/DsbL -
  PYR84_RS29505 (PYR84_29505) - 6540101..6540790 (-) 690 WP_043790827.1 SPOR domain-containing protein -
  PYR84_RS29510 (PYR84_29510) argS 6540811..6542508 (-) 1698 WP_016450693.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59267.33 Da        Isoelectric Point: 4.5784

>NTDB_id=809600 PYR84_RS29485 WP_016454603.1 6536069..6537685(-) (rpoN/rpoN1) [Delftia tsuruhatensis strain Ery-6A]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANDDGDHEAASSAPEPAAPGADAADSFQESR
ADQPSAAVEWEAPSDTSSGDAVETSGTAESLSWEGDGQTNSGNDDRDWGSDAPSSRTRGQGDDDETDATELARSAESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEECEELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDQLADAEREGDGSAEDEDRQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREAMVLIARLEPRPGRR
FADVQRQIVVPDVIVRPVRMGAGRMEFSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVAAEDPRKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=809600 PYR84_RS29485 WP_016454603.1 6536069..6537685(-) (rpoN/rpoN1) [Delftia tsuruhatensis strain Ery-6A]
TTGAAGCCCGGACTGTCGCTGCGCGTCTCCCAGCATCTTTCGCTCACCCCGCAACTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAGGTGGAGCAGATGCTGGGCGACAACCCCTTCCTGGAGCTGGCGAACGACGACG
GCGACCACGAAGCGGCAAGCAGCGCCCCGGAGCCTGCGGCGCCCGGCGCCGACGCCGCGGACTCCTTCCAGGAAAGCCGT
GCGGACCAGCCATCGGCTGCGGTGGAATGGGAGGCGCCGTCGGACACATCCTCCGGCGATGCCGTCGAGACCTCCGGCAC
GGCCGAGTCCCTGAGCTGGGAAGGCGATGGCCAGACCAACTCGGGCAACGACGACCGCGACTGGGGCAGCGATGCGCCTT
CCAGCCGCACGCGCGGCCAGGGTGACGATGACGAGACCGATGCCACCGAGCTGGCACGCAGCGCAGAAAGCCTGACCGAC
CACCTGCATCGCCAGGCCCTGAGCCTGCGCCTGGGCGAGGTGGATCGCGCCGCGCTGCGCTTTCTGATCGAGAACCTCAA
CGACGACGGCTACCTGGAGGACCCGCTCGACGAGCTGGCACAGGGCCTGGCGGGCGACGACCTGGAGGAGTGCGAGGAAC
TGGTGCACCGCTTCACCGTGGCGCTGCGCCTGTTGCAAAGCCTGGAGCCGGTGGGTGTGGGCGCGCGCGACCTGGCCGAA
TGCCTGACGCTGCAGCTGCGCGACCAACTGGCCGATGCCGAGCGCGAAGGCGACGGCAGTGCCGAGGACGAGGATCGGCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGCGCCCAGCCCATGGACCTGCTGGCGCGGCGTGACCTGCGCAAGCTCGCCA
GCCTGTGCGGCGCGCGCGAGGAGCGGCTGCGCGAGGCGATGGTCCTGATCGCCCGGCTGGAGCCGCGCCCGGGCCGGCGC
TTCGCCGACGTGCAGCGCCAGATCGTCGTGCCCGATGTCATCGTGCGCCCGGTGCGCATGGGTGCGGGACGCATGGAGTT
CAGCGTGCAACTCAACCCCGATGTCATGCCCAAGCTGCGCGTGCACGACATCTATGCCAGCGCGCTGCGCAGCCACCGGG
GCAGCGAAGGCCATGCGGCGCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCGCAGGCCATCGTGGAGCGCCAGAAGAACTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCGCT
GGTGCTGCGCGACATTGCCGATGCGCTGGGCCTGCATGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCTA
CGCCGCAGGGCACCTACGAACTCAAGTATTTCTTCGGCTCGGGCCTGGGCACCGAGGCGGGCGGCAACGCGTCGAGCACG
GCCGTGCGCGCGCTCATCAAGCAGTTCGTCGCAGCCGAGGACCCCAGGAAGCCGCTGTCGGACAACCAGCTGGCCGACAT
GCTCAAGGAGCAGGGCATCGAATGCGCACGGCGCACCGTGGCCAAGTACCGCGAACTGCTCAAGATCCCCCCGACCACGC
TGCGCAAGGCCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.111

100

0.513