Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PYR84_RS01725 Genome accession   NZ_CP120956
Coordinates   392072..393457 (+) Length   461 a.a.
NCBI ID   WP_016448587.1    Uniprot ID   A0AAX3SMY1
Organism   Delftia tsuruhatensis strain Ery-6A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 387072..398457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYR84_RS01700 (PYR84_01700) lplT 387892..389193 (-) 1302 WP_016448591.1 lysophospholipid transporter LplT -
  PYR84_RS01705 (PYR84_01705) alr 389328..390431 (+) 1104 WP_016448590.1 alanine racemase -
  PYR84_RS01710 (PYR84_01710) - 390432..390872 (-) 441 WP_277849258.1 MarR family transcriptional regulator -
  PYR84_RS01715 (PYR84_01715) - 390969..391784 (+) 816 WP_017407487.1 siderophore-interacting protein -
  PYR84_RS01725 (PYR84_01725) radA 392072..393457 (+) 1386 WP_016448587.1 DNA repair protein RadA Machinery gene
  PYR84_RS01730 (PYR84_01730) - 393541..393987 (+) 447 WP_047468078.1 hypothetical protein -
  PYR84_RS01735 (PYR84_01735) - 394032..394970 (+) 939 WP_016448585.1 branched-chain amino acid transaminase -
  PYR84_RS01740 (PYR84_01740) - 395093..395302 (+) 210 WP_012202256.1 zinc-finger domain-containing protein -
  PYR84_RS01745 (PYR84_01745) - 395334..396194 (-) 861 WP_017407684.1 capsular polysaccharide synthesis protein -
  PYR84_RS01750 (PYR84_01750) - 396325..397593 (+) 1269 WP_016448583.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48096.64 Da        Isoelectric Point: 7.6673

>NTDB_id=809580 PYR84_RS01725 WP_016448587.1 392072..393457(+) (radA) [Delftia tsuruhatensis strain Ery-6A]
MAKDKTTFICNACGGSSPRWLGKCPACGAWNSLIEAVAEPAGAGKNRLSQPQGYAGLANAQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIPGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=809580 PYR84_RS01725 WP_016448587.1 392072..393457(+) (radA) [Delftia tsuruhatensis strain Ery-6A]
ATGGCCAAAGACAAAACCACGTTCATCTGCAATGCCTGCGGCGGCTCCAGCCCGCGCTGGCTGGGCAAGTGCCCGGCCTG
CGGGGCCTGGAATTCGCTGATCGAGGCCGTTGCCGAGCCTGCGGGCGCGGGCAAGAACCGGCTCAGCCAGCCGCAGGGCT
ATGCGGGCCTGGCCAATGCCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGACCCCGGAATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGATGCGCTGCACCGCGTGGGCCTGCCCACGCTGTATGTGACCGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGTTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAATGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACGCAGCCGGCCGTGGTCGTCATCGACTCCATTCAGACCGTGTACTCGGACCA
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCATGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACC
GTGCTCTACTTCGAGGGCGACACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGTGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTCACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCGGTGCCGGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAAATACAGGCCCTGGTCGAC
CAGGGCGGCCCCGCGCCCCGGCGCCTGTCCGTGGGCCTGGACCGGGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCATGCAGGCGTGGCCTGCGCGGACCAGGATGTCTTCGTCAATGCCGTGGGCGGCGTGCGCATCAGCGAGCCGGCGGCCG
ACCTGGCCGTGATGCTGTCCATCACCTCCAGCCTTCGCGGCCGCGCCCTGCCCAAGGGATTCCTGGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTCGGCTTCACCATGGC
CGTGGTGCCCAAGGCCAATGCGCCCAAGAAGGCCATCCCCGGCCTGACCGTGCATGCCGTGGAGCGCGTGGACGAAGCCA
TGAACATCGTCCGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

98.915

0.482
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus pneumoniae Rx1

48.19

95.879

0.462
  radA Streptococcus pneumoniae D39

48.19

95.879

0.462
  radA Streptococcus pneumoniae R6

48.19

95.879

0.462
  radA Streptococcus pneumoniae TIGR4

48.19

95.879

0.462
  radA Streptococcus mitis SK321

48.961

93.926

0.46