Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P6F23_RS05300 Genome accession   NZ_CP120953
Coordinates   1010918..1011880 (-) Length   320 a.a.
NCBI ID   WP_000735592.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBSIR0001     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1005918..1016880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6F23_RS05280 (P6F23_05280) dprA 1007119..1007961 (-) 843 WP_001015250.1 DNA-processing protein DprA Machinery gene
  P6F23_RS05285 (P6F23_05285) - 1008099..1009127 (-) 1029 WP_000162771.1 siderophore ABC transporter substrate-binding protein -
  P6F23_RS05290 (P6F23_05290) - 1009189..1009950 (-) 762 WP_000614758.1 ATP-binding cassette domain-containing protein -
  P6F23_RS05295 (P6F23_05295) - 1009947..1010921 (-) 975 WP_000588583.1 iron chelate uptake ABC transporter family permease subunit -
  P6F23_RS05300 (P6F23_05300) ceuB 1010918..1011880 (-) 963 WP_000735592.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  P6F23_RS05305 (P6F23_05305) - 1012120..1012668 (-) 549 WP_000136503.1 sugar O-acetyltransferase -
  P6F23_RS05310 (P6F23_05310) - 1012689..1013450 (-) 762 WP_000201092.1 ribonuclease HII -
  P6F23_RS05315 (P6F23_05315) ylqF 1013437..1014288 (-) 852 WP_000201280.1 ribosome biogenesis GTPase YlqF -
  P6F23_RS05320 (P6F23_05320) - 1014564..1015136 (-) 573 WP_001231797.1 L,D-transpeptidase -
  P6F23_RS05325 (P6F23_05325) - 1015338..1016822 (-) 1485 WP_000256021.1 carbon starvation CstA family protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34864.00 Da        Isoelectric Point: 8.7207

>NTDB_id=809566 P6F23_RS05300 WP_000735592.1 1010918..1011880(-) (ceuB) [Streptococcus agalactiae strain GBSIR0001]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLNQSQVDIFLASRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGIAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISLTKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=809566 P6F23_RS05300 WP_000735592.1 1010918..1011880(-) (ceuB) [Streptococcus agalactiae strain GBSIR0001]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTTAA
ATCTATCCCACTGGAGCAAATAACACACCTTAATCAATCACAGGTAGATATTTTTTTAGCGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTAATGCAACAACTCACCCAAAATAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATTGCTTCAGGTTTTGCCATTTTAGGATCGCTGCTTTTTGTAACTATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTGTATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AAAATTTAGGGATTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCTTAACTAAAGGGGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTGGGTAGTGCCTTTTTCTTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.589

99.688

0.484