Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RPM48_RS27980 Genome accession   NZ_CP135095
Coordinates   5982078..5982443 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain Paer3771     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5977078..5987443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM48_RS27950 (RPM48_27950) pyrR 5977700..5978212 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RPM48_RS27955 (RPM48_27955) ruvX 5978324..5978758 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  RPM48_RS27960 (RPM48_27960) - 5978758..5979327 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  RPM48_RS27965 (RPM48_27965) - 5979376..5980269 (-) 894 WP_003084580.1 TonB family protein -
  RPM48_RS27970 (RPM48_27970) gshB 5980416..5981369 (-) 954 WP_003100943.1 glutathione synthase -
  RPM48_RS27975 (RPM48_27975) pilG 5981624..5982031 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  RPM48_RS27980 (RPM48_27980) pilH 5982078..5982443 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  RPM48_RS27985 (RPM48_27985) - 5982494..5983030 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  RPM48_RS27990 (RPM48_27990) pilJ 5983115..5985163 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  RPM48_RS27995 (RPM48_27995) pilK 5985224..5986099 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=809361 RPM48_RS27980 WP_003084587.1 5982078..5982443(+) (pilH) [Pseudomonas aeruginosa strain Paer3771]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=809361 RPM48_RS27980 WP_003084587.1 5982078..5982443(+) (pilH) [Pseudomonas aeruginosa strain Paer3771]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364