Detailed information
Overview
| Name | clpC | Type | Regulator |
| Locus tag | LLHP_RS09555 | Genome accession | NZ_CP120921 |
| Coordinates | 1874981..1877431 (-) | Length | 816 a.a. |
| NCBI ID | WP_011675609.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris subsp. cremoris HP | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1851326..1900756 | 1874981..1877431 | within | 0 |
| IScluster/Tn | 1878092..1879464 | 1874981..1877431 | flank | 661 |
Gene organization within MGE regions
Location: 1851326..1900756
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLHP_RS09430 (LLHP_09490) | - | 1851326..1852006 (+) | 681 | WP_021166361.1 | ABC transporter ATP-binding protein | - |
| LLHP_RS09435 (LLHP_09495) | - | 1852048..1852152 (-) | 105 | Protein_1858 | hypothetical protein | - |
| LLHP_RS09440 (LLHP_09500) | - | 1852663..1853433 (-) | 771 | WP_032951430.1 | hypothetical protein | - |
| LLHP_RS09445 (LLHP_09505) | - | 1853973..1854152 (-) | 180 | WP_032951429.1 | hypothetical protein | - |
| LLHP_RS09450 (LLHP_09510) | - | 1854152..1854496 (-) | 345 | WP_032951428.1 | nucleotide pyrophosphohydrolase | - |
| LLHP_RS09455 (LLHP_09515) | istB | 1854680..1855438 (-) | 759 | WP_396424806.1 | IS21-like element IS712 family helper ATPase IstB | - |
| LLHP_RS09460 (LLHP_09520) | istA | 1855450..1856673 (-) | 1224 | WP_003331415.1 | IS21-like element IS712 family transposase | - |
| LLHP_RS09465 (LLHP_09525) | - | 1856749..1858341 (-) | 1593 | WP_081214368.1 | DUF2075 domain-containing protein | - |
| LLHP_RS09470 (LLHP_09530) | - | 1858359..1859390 (-) | 1032 | Protein_1865 | DNA/RNA helicase domain-containing protein | - |
| LLHP_RS09480 (LLHP_09540) | - | 1861085..1861471 (-) | 387 | WP_396424810.1 | hypothetical protein | - |
| LLHP_RS09485 (LLHP_09545) | - | 1861901..1862837 (+) | 937 | Protein_1868 | IS30 family transposase | - |
| LLHP_RS09490 (LLHP_09550) | - | 1862841..1863158 (-) | 318 | WP_063302276.1 | hypothetical protein | - |
| LLHP_RS09495 (LLHP_09555) | - | 1863283..1863771 (-) | 489 | WP_235808532.1 | transcriptional regulator | - |
| LLHP_RS09500 (LLHP_09560) | - | 1863835..1864950 (-) | 1116 | WP_063302275.1 | UvrD-helicase domain-containing protein | - |
| LLHP_RS09505 (LLHP_09565) | - | 1864935..1866539 (-) | 1605 | WP_063302274.1 | ATP-dependent endonuclease | - |
| LLHP_RS09510 (LLHP_09570) | - | 1866569..1866733 (-) | 165 | Protein_1873 | restriction endonuclease subunit R | - |
| LLHP_RS09515 (LLHP_09575) | - | 1867627..1868913 (-) | 1287 | WP_063302290.1 | hypothetical protein | - |
| LLHP_RS09520 (LLHP_09580) | - | 1868951..1869127 (-) | 177 | WP_011675617.1 | hypothetical protein | - |
| LLHP_RS09525 (LLHP_09585) | - | 1869538..1869699 (-) | 162 | WP_169844095.1 | hypothetical protein | - |
| LLHP_RS09530 (LLHP_09590) | - | 1870013..1870948 (+) | 936 | WP_031559015.1 | IS30 family transposase | - |
| LLHP_RS09535 (LLHP_09595) | - | 1871175..1871742 (+) | 568 | Protein_1878 | IS3 family transposase | - |
| LLHP_RS09540 (LLHP_09600) | - | 1871776..1872711 (-) | 936 | WP_032951316.1 | tyrosine-type recombinase/integrase | - |
| LLHP_RS09545 (LLHP_09605) | eno | 1872800..1874101 (-) | 1302 | WP_010905473.1 | surface-displayed alpha-enolase | - |
| LLHP_RS09550 (LLHP_09610) | hpf | 1874289..1874846 (-) | 558 | WP_011834629.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LLHP_RS09555 (LLHP_09615) | clpC | 1874981..1877431 (-) | 2451 | WP_011675609.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| LLHP_RS09560 (LLHP_09620) | - | 1877421..1877876 (-) | 456 | WP_011834627.1 | CtsR family transcriptional regulator | - |
| LLHP_RS09570 (LLHP_09630) | greA | 1879556..1880026 (-) | 471 | WP_014573028.1 | transcription elongation factor GreA | - |
| LLHP_RS09575 (LLHP_09635) | mltG | 1880087..1881727 (-) | 1641 | WP_032951319.1 | endolytic transglycosylase MltG | - |
| LLHP_RS09580 (LLHP_09640) | rpoE | 1881863..1882426 (-) | 564 | WP_021166354.1 | DNA-directed RNA polymerase subunit delta | - |
| LLHP_RS09585 (LLHP_09645) | - | 1882642..1883154 (-) | 513 | WP_011834623.1 | adenine phosphoribosyltransferase | - |
| LLHP_RS09590 (LLHP_09650) | recJ | 1883278..1885506 (-) | 2229 | WP_032951320.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| LLHP_RS09595 (LLHP_09655) | - | 1885679..1886380 (-) | 702 | WP_011675772.1 | SDR family oxidoreductase | - |
| LLHP_RS09600 (LLHP_09660) | rnz | 1886373..1887296 (-) | 924 | WP_015082147.1 | ribonuclease Z | - |
| LLHP_RS09610 (LLHP_09670) | - | 1888061..1888408 (+) | 348 | Protein_1892 | XRE family transcriptional regulator | - |
| LLHP_RS09615 (LLHP_09675) | - | 1888835..1889533 (+) | 699 | WP_032951322.1 | hypothetical protein | - |
| LLHP_RS09625 (LLHP_09685) | - | 1889782..1890684 (-) | 903 | WP_396424811.1 | SPFH domain-containing protein | - |
| LLHP_RS09630 (LLHP_09690) | - | 1890849..1891517 (-) | 669 | WP_011675767.1 | hypothetical protein | - |
| LLHP_RS09635 (LLHP_09695) | miaA | 1891663..1892547 (-) | 885 | WP_011675766.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| LLHP_RS09640 (LLHP_09700) | - | 1892679..1893344 (-) | 666 | WP_011675765.1 | YitT family protein | - |
| LLHP_RS09645 (LLHP_09705) | - | 1893539..1893709 (+) | 171 | WP_080683462.1 | DUF3042 family protein | - |
| LLHP_RS09650 (LLHP_09710) | - | 1893762..1895777 (-) | 2016 | WP_011675763.1 | potassium transporter Kup | - |
| LLHP_RS09655 (LLHP_09715) | - | 1895992..1898013 (-) | 2022 | WP_063302303.1 | potassium transporter Kup | - |
| LLHP_RS09660 (LLHP_09720) | gndA | 1898195..1899613 (-) | 1419 | WP_014573039.1 | NADP-dependent phosphogluconate dehydrogenase | - |
| LLHP_RS09665 (LLHP_09725) | - | 1899747..1900307 (-) | 561 | WP_011675760.1 | YtxH domain-containing protein | - |
| LLHP_RS09670 (LLHP_09730) | - | 1900337..1900756 (-) | 420 | WP_011675759.1 | DUF948 domain-containing protein | - |
Sequence
Protein
Download Length: 816 a.a. Molecular weight: 90298.65 Da Isoelectric Point: 6.5301
>NTDB_id=809342 LLHP_RS09555 WP_011675609.1 1874981..1877431(-) (clpC) [Lactococcus cremoris subsp. cremoris HP]
MKFENVKYTPTLDRIFEKAAEDAHQYQYGTIESAHLLAAMATTSGSIAYSILAGMNVDSSDLLIDLEDLSSHVKVKRSEL
RFSPRAEEVVTVASFLAVHNNAEAVGTEHLLYALLQVEDGFGIQLLKLQKINIVSLRKEIEKRTGLKVPENKKAVTPMSK
RKMAKGVAENSSTPTLDSVSSDLTEAARSGKLDPMIGREAEVDRLIHILSRRTKNNPVLVGEPGVGKSAIIEGLAQRIVN
GQVPIGLMNSRIMALNMATVVAGTKFRGEFEDRLTAIVEEVSADPDVIIFIDELHTIIGAGGGMDSVNDAANILKPALAR
GDFQMVGATTYHEYQKYIEKDEALERRLARINVDEPSPDEAIAILQGLREKFEDYHQVKFTDQAIKSAVTLSVRYMTSRK
LPDKAIDLLDEAAAAVKISVKNQETKRLELEKDLVKAQEELAEAVIKLDVKASRIKEKAVEKISDKIYKFSIKEEKRQEV
TDQAVIAVASTLTGVPITQMTKSESDRLINLEKELHKRVVGQEEAISAVSRAIRRARSGVADSRRPMGSFMFLGPTGVGK
TELAKALADSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSVVLLDEVEKAHPDVFNIML
QILDDGFVTDTKGRKVDFRNTIIIMTSNLGATALRDDKTVGFGAKNITADYSAMQSRILEELKRHYRPEFLNRIDENIVF
HSLESQEIEQIVKIMSKSLIKRLAEQDIHVKLTPSAIKLIAEVGFDPEYGARPLRKALQKEVEDLLSEQLLSGEIKAGNH
ISIGASNKKIKIAQIV
MKFENVKYTPTLDRIFEKAAEDAHQYQYGTIESAHLLAAMATTSGSIAYSILAGMNVDSSDLLIDLEDLSSHVKVKRSEL
RFSPRAEEVVTVASFLAVHNNAEAVGTEHLLYALLQVEDGFGIQLLKLQKINIVSLRKEIEKRTGLKVPENKKAVTPMSK
RKMAKGVAENSSTPTLDSVSSDLTEAARSGKLDPMIGREAEVDRLIHILSRRTKNNPVLVGEPGVGKSAIIEGLAQRIVN
GQVPIGLMNSRIMALNMATVVAGTKFRGEFEDRLTAIVEEVSADPDVIIFIDELHTIIGAGGGMDSVNDAANILKPALAR
GDFQMVGATTYHEYQKYIEKDEALERRLARINVDEPSPDEAIAILQGLREKFEDYHQVKFTDQAIKSAVTLSVRYMTSRK
LPDKAIDLLDEAAAAVKISVKNQETKRLELEKDLVKAQEELAEAVIKLDVKASRIKEKAVEKISDKIYKFSIKEEKRQEV
TDQAVIAVASTLTGVPITQMTKSESDRLINLEKELHKRVVGQEEAISAVSRAIRRARSGVADSRRPMGSFMFLGPTGVGK
TELAKALADSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSVVLLDEVEKAHPDVFNIML
QILDDGFVTDTKGRKVDFRNTIIIMTSNLGATALRDDKTVGFGAKNITADYSAMQSRILEELKRHYRPEFLNRIDENIVF
HSLESQEIEQIVKIMSKSLIKRLAEQDIHVKLTPSAIKLIAEVGFDPEYGARPLRKALQKEVEDLLSEQLLSGEIKAGNH
ISIGASNKKIKIAQIV
Nucleotide
Download Length: 2451 bp
>NTDB_id=809342 LLHP_RS09555 WP_011675609.1 1874981..1877431(-) (clpC) [Lactococcus cremoris subsp. cremoris HP]
ATGAAATTTGAAAATGTAAAATATACACCAACACTGGACCGAATTTTCGAGAAAGCAGCAGAAGATGCCCACCAATATCA
ATACGGTACGATTGAAAGTGCTCATTTATTGGCAGCAATGGCTACTACTTCAGGCTCAATTGCTTACAGTATTCTTGCTG
GAATGAATGTTGATTCTTCAGACTTACTGATTGATTTGGAAGATTTATCTAGCCATGTCAAAGTGAAACGTTCTGAATTA
CGTTTCTCTCCTCGCGCAGAAGAAGTGGTCACTGTAGCTAGCTTTTTAGCTGTTCATAATAATGCAGAAGCAGTAGGAAC
GGAGCATTTGCTTTATGCATTACTTCAAGTCGAAGATGGTTTTGGTATTCAACTTTTGAAGTTACAAAAAATCAATATTG
TTTCTTTGCGAAAAGAAATTGAAAAAAGAACAGGACTTAAAGTTCCAGAAAACAAAAAAGCTGTAACACCAATGTCCAAA
CGTAAGATGGCAAAAGGGGTAGCAGAGAATTCAAGTACACCAACTTTGGATTCAGTTTCTTCAGATTTAACTGAAGCTGC
TCGTTCAGGAAAGCTTGACCCAATGATTGGTCGGGAAGCAGAAGTTGACCGTTTGATTCATATTCTTAGTCGTAGAACAA
AAAATAACCCTGTTTTAGTTGGCGAACCTGGTGTTGGTAAATCAGCAATAATCGAGGGATTGGCTCAAAGAATTGTCAAC
GGCCAAGTACCTATCGGTTTGATGAATAGCCGGATTATGGCCCTAAATATGGCAACTGTTGTTGCTGGTACAAAATTTAG
AGGTGAATTTGAAGACCGCTTGACAGCAATTGTTGAAGAAGTAAGTGCTGACCCAGATGTCATCATTTTCATTGATGAAT
TGCATACAATTATTGGTGCTGGCGGGGGCATGGACTCGGTCAATGATGCAGCAAATATTTTAAAACCAGCCCTTGCACGT
GGTGATTTTCAAATGGTTGGGGCAACGACTTATCACGAATACCAAAAATACATTGAAAAAGATGAAGCATTAGAACGTCG
TTTGGCAAGAATCAATGTTGATGAGCCAAGTCCAGATGAAGCCATTGCTATCCTACAAGGGTTACGTGAGAAATTTGAAG
ATTATCATCAAGTAAAATTTACTGACCAAGCGATTAAAAGCGCTGTGACACTTAGTGTTCGGTACATGACCAGTCGCAAA
TTGCCTGATAAAGCCATCGACTTGCTTGATGAAGCAGCGGCAGCAGTTAAAATTTCTGTTAAAAACCAAGAAACAAAACG
TCTTGAATTAGAGAAAGACTTAGTTAAAGCTCAAGAAGAACTAGCGGAAGCTGTCATTAAACTTGATGTTAAAGCCTCTC
GCATCAAAGAAAAAGCTGTTGAAAAAATTTCTGACAAGATTTATAAATTCTCAATAAAAGAGGAAAAACGTCAAGAAGTT
ACTGACCAAGCTGTTATTGCTGTTGCCTCAACGCTGACAGGTGTTCCAATTACTCAAATGACTAAATCTGAAAGCGACCG
TTTGATTAATCTTGAAAAAGAATTGCACAAACGGGTCGTTGGTCAAGAAGAAGCAATTTCTGCGGTTTCAAGAGCCATTC
GTCGGGCACGTTCTGGTGTGGCTGATAGTCGCCGTCCAATGGGTTCATTTATGTTTCTTGGACCAACTGGTGTTGGGAAA
ACTGAGTTAGCTAAGGCCTTGGCCGATAGTGTTTTTGGTAGCGAAGACAACATGATTCGAGTGGATATGAGTGAATTTAT
GGAAAAACATTCAACTTCACGATTGATTGGAGCACCTCCAGGATATGTTGGTTATGATGAAGGTGGTCAATTGACTGAAC
GTGTTCGTAATAAACCCTATTCTGTGGTTCTTTTAGATGAAGTTGAGAAAGCTCATCCTGACGTTTTCAATATCATGTTG
CAAATTCTAGATGATGGATTTGTGACAGATACAAAGGGTCGCAAAGTTGATTTTAGAAACACAATTATTATCATGACTTC
AAACTTGGGTGCAACGGCTCTTCGTGATGATAAAACAGTTGGTTTTGGTGCAAAAAATATCACGGCTGACTACTCAGCTA
TGCAATCAAGAATTTTGGAAGAACTTAAACGTCATTATCGTCCAGAGTTTCTCAATCGTATTGATGAAAACATTGTTTTC
CATTCATTGGAAAGTCAAGAAATTGAACAAATTGTTAAGATTATGAGCAAATCTTTGATTAAACGTTTGGCGGAACAAGA
TATTCATGTGAAACTTACGCCATCAGCAATAAAACTAATCGCTGAAGTAGGATTTGACCCAGAATATGGGGCACGTCCAT
TGCGTAAAGCACTCCAAAAAGAAGTTGAAGATCTTTTAAGTGAGCAATTGCTCTCGGGTGAGATTAAAGCAGGAAATCAT
ATTTCCATTGGTGCTTCTAATAAAAAAATTAAAATCGCTCAAATTGTTTGA
ATGAAATTTGAAAATGTAAAATATACACCAACACTGGACCGAATTTTCGAGAAAGCAGCAGAAGATGCCCACCAATATCA
ATACGGTACGATTGAAAGTGCTCATTTATTGGCAGCAATGGCTACTACTTCAGGCTCAATTGCTTACAGTATTCTTGCTG
GAATGAATGTTGATTCTTCAGACTTACTGATTGATTTGGAAGATTTATCTAGCCATGTCAAAGTGAAACGTTCTGAATTA
CGTTTCTCTCCTCGCGCAGAAGAAGTGGTCACTGTAGCTAGCTTTTTAGCTGTTCATAATAATGCAGAAGCAGTAGGAAC
GGAGCATTTGCTTTATGCATTACTTCAAGTCGAAGATGGTTTTGGTATTCAACTTTTGAAGTTACAAAAAATCAATATTG
TTTCTTTGCGAAAAGAAATTGAAAAAAGAACAGGACTTAAAGTTCCAGAAAACAAAAAAGCTGTAACACCAATGTCCAAA
CGTAAGATGGCAAAAGGGGTAGCAGAGAATTCAAGTACACCAACTTTGGATTCAGTTTCTTCAGATTTAACTGAAGCTGC
TCGTTCAGGAAAGCTTGACCCAATGATTGGTCGGGAAGCAGAAGTTGACCGTTTGATTCATATTCTTAGTCGTAGAACAA
AAAATAACCCTGTTTTAGTTGGCGAACCTGGTGTTGGTAAATCAGCAATAATCGAGGGATTGGCTCAAAGAATTGTCAAC
GGCCAAGTACCTATCGGTTTGATGAATAGCCGGATTATGGCCCTAAATATGGCAACTGTTGTTGCTGGTACAAAATTTAG
AGGTGAATTTGAAGACCGCTTGACAGCAATTGTTGAAGAAGTAAGTGCTGACCCAGATGTCATCATTTTCATTGATGAAT
TGCATACAATTATTGGTGCTGGCGGGGGCATGGACTCGGTCAATGATGCAGCAAATATTTTAAAACCAGCCCTTGCACGT
GGTGATTTTCAAATGGTTGGGGCAACGACTTATCACGAATACCAAAAATACATTGAAAAAGATGAAGCATTAGAACGTCG
TTTGGCAAGAATCAATGTTGATGAGCCAAGTCCAGATGAAGCCATTGCTATCCTACAAGGGTTACGTGAGAAATTTGAAG
ATTATCATCAAGTAAAATTTACTGACCAAGCGATTAAAAGCGCTGTGACACTTAGTGTTCGGTACATGACCAGTCGCAAA
TTGCCTGATAAAGCCATCGACTTGCTTGATGAAGCAGCGGCAGCAGTTAAAATTTCTGTTAAAAACCAAGAAACAAAACG
TCTTGAATTAGAGAAAGACTTAGTTAAAGCTCAAGAAGAACTAGCGGAAGCTGTCATTAAACTTGATGTTAAAGCCTCTC
GCATCAAAGAAAAAGCTGTTGAAAAAATTTCTGACAAGATTTATAAATTCTCAATAAAAGAGGAAAAACGTCAAGAAGTT
ACTGACCAAGCTGTTATTGCTGTTGCCTCAACGCTGACAGGTGTTCCAATTACTCAAATGACTAAATCTGAAAGCGACCG
TTTGATTAATCTTGAAAAAGAATTGCACAAACGGGTCGTTGGTCAAGAAGAAGCAATTTCTGCGGTTTCAAGAGCCATTC
GTCGGGCACGTTCTGGTGTGGCTGATAGTCGCCGTCCAATGGGTTCATTTATGTTTCTTGGACCAACTGGTGTTGGGAAA
ACTGAGTTAGCTAAGGCCTTGGCCGATAGTGTTTTTGGTAGCGAAGACAACATGATTCGAGTGGATATGAGTGAATTTAT
GGAAAAACATTCAACTTCACGATTGATTGGAGCACCTCCAGGATATGTTGGTTATGATGAAGGTGGTCAATTGACTGAAC
GTGTTCGTAATAAACCCTATTCTGTGGTTCTTTTAGATGAAGTTGAGAAAGCTCATCCTGACGTTTTCAATATCATGTTG
CAAATTCTAGATGATGGATTTGTGACAGATACAAAGGGTCGCAAAGTTGATTTTAGAAACACAATTATTATCATGACTTC
AAACTTGGGTGCAACGGCTCTTCGTGATGATAAAACAGTTGGTTTTGGTGCAAAAAATATCACGGCTGACTACTCAGCTA
TGCAATCAAGAATTTTGGAAGAACTTAAACGTCATTATCGTCCAGAGTTTCTCAATCGTATTGATGAAAACATTGTTTTC
CATTCATTGGAAAGTCAAGAAATTGAACAAATTGTTAAGATTATGAGCAAATCTTTGATTAAACGTTTGGCGGAACAAGA
TATTCATGTGAAACTTACGCCATCAGCAATAAAACTAATCGCTGAAGTAGGATTTGACCCAGAATATGGGGCACGTCCAT
TGCGTAAAGCACTCCAAAAAGAAGTTGAAGATCTTTTAAGTGAGCAATTGCTCTCGGGTGAGATTAAAGCAGGAAATCAT
ATTTCCATTGGTGCTTCTAATAAAAAAATTAAAATCGCTCAAATTGTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
95.833 |
100 |
0.958 |
| clpC | Streptococcus thermophilus LMD-9 |
51.023 |
100 |
0.52 |
| clpC | Streptococcus thermophilus LMG 18311 |
50.903 |
100 |
0.518 |
| clpC | Streptococcus pneumoniae Rx1 |
49.517 |
100 |
0.502 |
| clpC | Streptococcus pneumoniae D39 |
49.517 |
100 |
0.502 |
| clpC | Streptococcus pneumoniae TIGR4 |
49.396 |
100 |
0.501 |
| clpC | Streptococcus mutans UA159 |
48.918 |
100 |
0.499 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
50.249 |
98.284 |
0.494 |
| clpE | Streptococcus mutans UA159 |
46.923 |
79.657 |
0.374 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
46.626 |
79.902 |
0.373 |
| clpE | Streptococcus pneumoniae TIGR4 |
47.049 |
76.838 |
0.362 |
| clpE | Streptococcus pneumoniae Rx1 |
47.049 |
76.838 |
0.362 |
| clpE | Streptococcus pneumoniae D39 |
47.049 |
76.838 |
0.362 |
| clpE | Streptococcus pneumoniae R6 |
47.049 |
76.838 |
0.362 |