Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HT079_RS06335 Genome accession   NZ_AP023067
Coordinates   1229064..1230443 (-) Length   459 a.a.
NCBI ID   WP_003687778.1    Uniprot ID   A0AAX2BYT1
Organism   Neisseria gonorrhoeae strain TUM19853     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1224064..1235443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT079_RS06320 (TUM19853C_12190) recB 1224185..1227787 (+) 3603 WP_003692769.1 exodeoxyribonuclease V subunit beta Machinery gene
  HT079_RS06325 (TUM19853C_12200) - 1227826..1228185 (+) 360 WP_003687781.1 rhodanese-like domain-containing protein -
  HT079_RS06330 (TUM19853C_12210) - 1228310..1228789 (+) 480 WP_003692767.1 DUF302 domain-containing protein -
  HT079_RS06335 (TUM19853C_12220) radA 1229064..1230443 (-) 1380 WP_003687778.1 DNA repair protein RadA Machinery gene
  HT079_RS11735 (TUM19853C_12230) - 1230636..1230893 (-) 258 WP_213085335.1 hypothetical protein -
  HT079_RS06340 (TUM19853C_12240) - 1230908..1232032 (+) 1125 WP_003687777.1 DNA cytosine methyltransferase -
  HT079_RS06345 (TUM19853C_12250) - 1232029..1233066 (+) 1038 WP_003687776.1 restriction endonuclease PLD domain-containing protein -
  HT079_RS06350 (TUM19853C_12260) - 1233082..1234956 (+) 1875 WP_003694912.1 Z1 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49536.99 Da        Isoelectric Point: 7.3938

>NTDB_id=80934 HT079_RS06335 WP_003687778.1 1229064..1230443(-) (radA) [Neisseria gonorrhoeae strain TUM19853]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESFAAPEPKNARFQSWAADTSTVQSLSAVTAAEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRSQRLELHAEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLSVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIHGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=80934 HT079_RS06335 WP_003687778.1 1229064..1230443(-) (radA) [Neisseria gonorrhoeae strain TUM19853]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGTCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCTTTGCCGCGCCCGAGCCGAAAAACGCCCGATTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCTGCCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGTT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAAGAATCCGCCCAACAGGTCGCCC
TGCGCTCGCAACGTTTGGAACTGCACGCCGAAGGCGTAAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGGCGGCC
TTGAAACAGCATCAGCCCGAAGTCGTCGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACGTCCGCCCCCGG
TTCCGTGTCGCAGGTGCGCGAATGTGCCGCCCAACTGACGCGTATGGCGAAACAAATGGGTATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGAGCGATTGCCGGCCCGCGCGTGCTGGAACATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCAAACGAATTGGGCGTGTTCGCGAT
GACCGAAAACGGTTTGAAAGGCGTATCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACA
CCCAAACGCCTCAGCGTCGGATTGGAACAAAACCGCCTTGCGATGCTGCTTGCCGTGTTAAACCGGCACGGCGGCATCGC
CTGTTTCGATCAGGATGTTTTTTTAAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTCTTCGGTGAAATCGGCCTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAGCTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCGAACCTGAAAATCCACGGCGTTTCAAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.129

0.497
  radA Streptococcus mitis NCTC 12261

47.02

98.693

0.464
  radA Streptococcus pneumoniae D39

47.124

98.475

0.464
  radA Streptococcus pneumoniae TIGR4

47.124

98.475

0.464
  radA Streptococcus pneumoniae R6

47.124

98.475

0.464
  radA Streptococcus pneumoniae Rx1

47.124

98.475

0.464
  radA Streptococcus mitis SK321

47.007

98.257

0.462

Multiple sequence alignment