Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLHP_RS03410 Genome accession   NZ_CP120921
Coordinates   667424..668695 (+) Length   423 a.a.
NCBI ID   WP_324187043.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris HP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 662424..673695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLHP_RS03385 (LLHP_03400) - 663112..663672 (+) 561 WP_032950467.1 GNAT family N-acetyltransferase -
  LLHP_RS03390 (LLHP_03405) - 663789..664187 (+) 399 WP_011676775.1 hypothetical protein -
  LLHP_RS03395 (LLHP_03410) - 664293..665225 (+) 933 WP_032950468.1 ABC transporter ATP-binding protein -
  LLHP_RS03400 (LLHP_03415) - 665222..666583 (+) 1362 WP_032950469.1 ABC transporter permease -
  LLHP_RS03405 (LLHP_03420) comEA 666826..667296 (+) 471 WP_231099719.1 helix-hairpin-helix domain-containing protein Machinery gene
  LLHP_RS03410 (LLHP_03425) comEC 667424..668695 (+) 1272 WP_324187043.1 ComEC/Rec2 family competence protein Machinery gene
  LLHP_RS03415 (LLHP_03430) comEC 668692..669201 (+) 510 WP_021165649.1 MBL fold metallo-hydrolase Machinery gene
  LLHP_RS03420 (LLHP_03435) - 669278..670168 (+) 891 WP_015082326.1 IS982-like element IS982B family transposase -
  LLHP_RS03425 (LLHP_03440) - 670189..670494 (+) 306 Protein_665 ComEC/Rec2 family competence protein -
  LLHP_RS03430 (LLHP_03445) - 670778..671554 (+) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LLHP_RS03435 (LLHP_03450) - 671737..671952 (+) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LLHP_RS03440 (LLHP_03455) atpB 671999..672712 (+) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LLHP_RS03445 (LLHP_03460) atpF 672727..673233 (+) 507 WP_010906128.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 49018.13 Da        Isoelectric Point: 9.7194

>NTDB_id=809325 LLHP_RS03410 WP_324187043.1 667424..668695(+) (comEC) [Lactococcus cremoris subsp. cremoris HP]
MIPILIVFAVFFLLINSLSIRDNENQPKNLSKIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNC
QLSFTGNLEIPETQRNFNGFDDQKYLTSQNIYRQITIQQITNVEIKKNFDLHTLRRKAIVWTQNHFPKPMSDYMTGLLFG
FLSKDFNQMSDIYSSLGIIHLFALSGMQVNFFIDWFRKILLRMGLTRERVNLVQIPFSIFYAFMTGLSVSVLRALFQKNI
RLTSLDNIAVTTLVLMLISPKFLLTTGGQLTLFYAFVISMLNHPFSNLNGLKKVLTESSVLSLCVLPLLIFDFHIFQPLS
ILLTIIFGFLFDFMLLPLLLCCFLISFLGFSLNLNYIFQILEWLVYKVDLPLHYPFVLGKPSSLELIILFVLIGLFVDSF
SHKKRRFFLIGFIFLFFSSLKIQ

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=809325 LLHP_RS03410 WP_324187043.1 667424..668695(+) (comEC) [Lactococcus cremoris subsp. cremoris HP]
ATGATTCCGATATTAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACC
AAAAAATCTCTCAAAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGA
ATGGACAAAAATATCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGT
CAGTTAAGTTTCACAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAAC
TAGTCAAAATATCTATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTT
TAAGGCGAAAGGCAATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACAGGTTTGCTTTTTGGC
TTTTTAAGTAAGGATTTTAATCAGATGAGCGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAAT
GCAAGTAAATTTTTTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAGAGAGTGAATCTTGTTC
AAATTCCATTTTCTATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATT
CGTCTGACTTCTTTGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGG
TGGTCAGCTTACCTTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAG
TGCTGACAGAATCATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCTTTCA
ATATTATTAACAATTATATTTGGTTTTCTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATT
TTTGGGATTTTCGCTCAATTTAAATTATATTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTACATT
ACCCCTTTGTTTTGGGGAAACCTAGTTCACTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTCATTT
TCTCATAAAAAAAGGAGATTTTTTTTAATTGGATTTATATTTTTATTTTTTTCATCACTAAAAATCCAATGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(157-397)

Domain of unknown function (DUF4131) (DUF4131)

(56-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

97.122

98.582

0.957
  comEC/celB Streptococcus mitis SK321

46.512

91.489

0.426
  comEC/celB Streptococcus mitis NCTC 12261

45.995

91.489

0.421
  comEC/celB Streptococcus pneumoniae TIGR4

45.995

91.489

0.421
  comEC/celB Streptococcus pneumoniae Rx1

45.22

91.489

0.414
  comEC/celB Streptococcus pneumoniae D39

45.22

91.489

0.414
  comEC/celB Streptococcus pneumoniae R6

45.22

91.489

0.414