Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P3X35_RS17925 Genome accession   NZ_CP120920
Coordinates   3557803..3558084 (-) Length   93 a.a.
NCBI ID   WP_020452985.1    Uniprot ID   A0AAW6KAP3
Organism   Bacillus paralicheniformis strain SYN-191     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3550702..3559471 3557803..3558084 within 0


Gene organization within MGE regions


Location: 3550702..3559471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS17885 (P3X35_17885) - 3550702..3552420 (+) 1719 WP_020452982.1 T7SS effector LXG polymorphic toxin -
  P3X35_RS17890 (P3X35_17890) - 3552426..3552710 (+) 285 WP_003185302.1 hypothetical protein -
  P3X35_RS17895 (P3X35_17895) - 3552739..3553034 (-) 296 Protein_3482 peptidoglycan-binding domain-containing protein -
  P3X35_RS17905 (P3X35_17905) smpB 3553615..3554088 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  P3X35_RS17910 (P3X35_17910) rnr 3554204..3556507 (-) 2304 WP_145646003.1 ribonuclease R -
  P3X35_RS17915 (P3X35_17915) - 3556521..3557267 (-) 747 WP_035337713.1 carboxylesterase -
  P3X35_RS17920 (P3X35_17920) secG 3557408..3557638 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  P3X35_RS17925 (P3X35_17925) abrB 3557803..3558084 (-) 282 WP_020452985.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P3X35_RS17930 (P3X35_17930) - 3558113..3558346 (-) 234 WP_164470226.1 helix-turn-helix transcriptional regulator -
  P3X35_RS17935 (P3X35_17935) - 3558499..3558900 (+) 402 WP_026580121.1 transcriptional regulator -
  P3X35_RS17940 (P3X35_17940) - 3559073..3559471 (+) 399 WP_186442188.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10358.19 Da        Isoelectric Point: 6.3182

>NTDB_id=809301 P3X35_RS17925 WP_020452985.1 3557803..3558084(-) (abrB) [Bacillus paralicheniformis strain SYN-191]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=809301 P3X35_RS17925 WP_020452985.1 3557803..3558084(-) (abrB) [Bacillus paralicheniformis strain SYN-191]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATACACCGACGGAGAAAACATCATTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACCAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCAAGGGGAGCAGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAATGA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)

AbrB C-terminal domain (AbrB_C)

(53-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

97.849

0.548