Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   P3X35_RS12890 Genome accession   NZ_CP120920
Coordinates   2596558..2597358 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SYN-191     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2591558..2602358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS12860 (P3X35_12860) - 2592542..2592796 (+) 255 WP_075213165.1 DUF2627 domain-containing protein -
  P3X35_RS12865 (P3X35_12865) - 2592907..2593632 (-) 726 WP_075213166.1 glycerophosphodiester phosphodiesterase -
  P3X35_RS12870 (P3X35_12870) - 2593767..2594387 (-) 621 WP_035399781.1 N-acetylmuramoyl-L-alanine amidase -
  P3X35_RS12875 (P3X35_12875) - 2594423..2594728 (-) 306 WP_026579325.1 membrane lipoprotein lipid attachment site-containing protein -
  P3X35_RS12880 (P3X35_12880) - 2595221..2595790 (-) 570 WP_020452125.1 serine acetyltransferase -
  P3X35_RS12885 (P3X35_12885) - 2595920..2596216 (-) 297 WP_020452126.1 antimicrobial peptide LCI -
  P3X35_RS12890 (P3X35_12890) spo0A 2596558..2597358 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  P3X35_RS12895 (P3X35_12895) spoIVB 2597648..2598898 (-) 1251 WP_031304732.1 SpoIVB peptidase -
  P3X35_RS12900 (P3X35_12900) recN 2599112..2600842 (-) 1731 WP_079289196.1 DNA repair protein RecN Machinery gene
  P3X35_RS12905 (P3X35_12905) argR 2600874..2601323 (-) 450 WP_020452129.1 transcriptional regulator ArgR -
  P3X35_RS12910 (P3X35_12910) - 2601487..2602332 (-) 846 WP_020452130.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=809279 P3X35_RS12890 WP_003183361.1 2596558..2597358(-) (spo0A) [Bacillus paralicheniformis strain SYN-191]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=809279 P3X35_RS12890 WP_003183361.1 2596558..2597358(-) (spo0A) [Bacillus paralicheniformis strain SYN-191]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAAAG
CGACATGGAAGTACTTGGTGTCGCGTACAACGGACAGGAATGCCTTTCGTTGTTTAAAGACAAGGAGCCCGATGTGCTTG
TGCTGGATATTATCATGCCTCACCTCGATGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGTCAGGAAGACGTGACGAAAAAAGCTGTAGATTTGGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAACTTAGTCGGCCATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCTTCTCAAAGCAGTGTGCTTCGGCCGCAGCCGGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTGCCCGCTCATATAAAAGGCTATTTATACTTAAGGGAAGCCATCTCCATGGTGTATAACGACATCGA
ACTGCTCGGAAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGAGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCCAAGCCGACGAATTCAGAATTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925