Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P3X35_RS09945 Genome accession   NZ_CP120920
Coordinates   1958700..1959128 (+) Length   142 a.a.
NCBI ID   WP_145685458.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SYN-191     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1953700..1964128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS09915 (P3X35_09915) - 1953955..1954563 (+) 609 WP_023857599.1 flavin reductase family protein -
  P3X35_RS09920 (P3X35_09920) wrbA 1954765..1955379 (+) 615 WP_026579653.1 NAD(P)H:quinone oxidoreductase -
  P3X35_RS09925 (P3X35_09925) - 1955690..1955830 (+) 141 WP_023857597.1 hypothetical protein -
  P3X35_RS09930 (P3X35_09930) - 1955823..1956656 (+) 834 WP_020451587.1 prohibitin family protein -
  P3X35_RS09935 (P3X35_09935) - 1956745..1957506 (+) 762 WP_025809940.1 hypothetical protein -
  P3X35_RS09940 (P3X35_09940) - 1957566..1958405 (+) 840 WP_026579651.1 thymidylate synthase -
  P3X35_RS09945 (P3X35_09945) nucA/comI 1958700..1959128 (+) 429 WP_145685458.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P3X35_RS09950 (P3X35_09950) lexA 1959326..1959949 (-) 624 WP_020451591.1 transcriptional repressor LexA -
  P3X35_RS09955 (P3X35_09955) yneA 1960102..1960413 (+) 312 WP_020451592.1 cell division suppressor protein YneA -
  P3X35_RS09960 (P3X35_09960) - 1960432..1961079 (+) 648 WP_020451593.1 recombinase family protein -
  P3X35_RS09965 (P3X35_09965) - 1961145..1961378 (+) 234 WP_020451594.1 DUF896 domain-containing protein -
  P3X35_RS09970 (P3X35_09970) tkt 1961542..1963545 (+) 2004 WP_079289398.1 transketolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15438.37 Da        Isoelectric Point: 7.8950

>NTDB_id=809277 P3X35_RS09945 WP_145685458.1 1958700..1959128(+) (nucA/comI) [Bacillus paralicheniformis strain SYN-191]
MIKKWAVHLLFSALVLLGLSGGAAYSSQHAEGVARYDDVLYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSDYADGTRILFIVR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=809277 P3X35_RS09945 WP_145685458.1 1958700..1959128(+) (nucA/comI) [Bacillus paralicheniformis strain SYN-191]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTGCTGCTTGGGCTTTCGGGAGGGGCTGCATATTCTTC
TCAGCATGCCGAAGGCGTTGCAAGGTATGATGACGTATTGTATTTTCCGGCATCGCGCTATCCTGAAACCGGTGCTCATA
TAAGCGATGCGATCAAAGCGGGCCATTCAGATGTCTGCACAATTGAAAGATCTGGAGCGGATAAGCGCCGTCAGGAATCA
TTAAAAGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGAGGAAAAGGAGC
GTCGGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGATTACGCTGACG
GGACGAGAATTTTGTTTATCGTTCGATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

88.732

0.528