Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3X35_RS08860 Genome accession   NZ_CP120920
Coordinates   1747595..1748497 (+) Length   300 a.a.
NCBI ID   WP_020451380.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SYN-191     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1742595..1753497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS08840 (P3X35_08840) - 1743247..1744944 (+) 1698 WP_033155131.1 hypothetical protein -
  P3X35_RS08845 (P3X35_08845) - 1744941..1745225 (+) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  P3X35_RS08850 (P3X35_08850) sucC 1745401..1746561 (+) 1161 WP_020451378.1 ADP-forming succinate--CoA ligase subunit beta -
  P3X35_RS08855 (P3X35_08855) sucD 1746580..1747482 (+) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  P3X35_RS08860 (P3X35_08860) dprA 1747595..1748497 (+) 903 WP_020451380.1 DNA-processing protein DprA Machinery gene
  P3X35_RS08865 (P3X35_08865) topA 1748702..1750777 (+) 2076 WP_020451381.1 type I DNA topoisomerase -
  P3X35_RS08870 (P3X35_08870) trmFO 1750853..1752157 (+) 1305 WP_025811382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3X35_RS08875 (P3X35_08875) xerC 1752224..1753138 (+) 915 WP_025811383.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33165.58 Da        Isoelectric Point: 10.0575

>NTDB_id=809272 P3X35_RS08860 WP_020451380.1 1747595..1748497(+) (dprA) [Bacillus paralicheniformis strain SYN-191]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTDEKNHLLTKLSLKRSDLCSIRKLAKQELSNVKRLIRSYEAAGVRM
AAICSPDYPASLKTIHDPPPVLFLKGDVKLLNEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPHVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSCGPSRLIQEGAKLVLNIEDILSELPPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=809272 P3X35_RS08860 WP_020451380.1 1747595..1748497(+) (dprA) [Bacillus paralicheniformis strain SYN-191]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGACGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGAAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGAGTCCGCATG
GCCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAGA
TGTTAAACTTCTCAATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCCCAT
CAGGAGAGCATCTGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCCACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCTGGTCCGATCTTTGACGCCAACTCTTGCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.191

99.667

0.57
  dprA Haemophilus influenzae Rd KW20

45.763

78.667

0.36