Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P3X35_RS08030 Genome accession   NZ_CP120920
Coordinates   1584138..1584425 (+) Length   95 a.a.
NCBI ID   WP_020451235.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SYN-191     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579138..1589425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS08010 (P3X35_08010) - 1580800..1581174 (+) 375 WP_020451232.1 nuclear transport factor 2 family protein -
  P3X35_RS08015 (P3X35_08015) - 1581299..1582531 (-) 1233 WP_023857280.1 aminopeptidase -
  P3X35_RS08020 (P3X35_08020) - 1582621..1582752 (-) 132 WP_003181378.1 protein YkpC -
  P3X35_RS08025 (P3X35_08025) mreBH 1582826..1583833 (-) 1008 WP_020451234.1 rod-share determining protein MreBH -
  P3X35_RS08030 (P3X35_08030) abrB 1584138..1584425 (+) 288 WP_020451235.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P3X35_RS08035 (P3X35_08035) - 1584593..1585930 (+) 1338 WP_020451236.1 ATP-binding protein -
  P3X35_RS08040 (P3X35_08040) - 1585994..1586656 (+) 663 WP_020451237.1 TrkA family potassium uptake protein -
  P3X35_RS08045 (P3X35_08045) ade 1586784..1588505 (+) 1722 WP_023857279.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10626.48 Da        Isoelectric Point: 5.8979

>NTDB_id=809271 P3X35_RS08030 WP_020451235.1 1584138..1584425(+) (abrB) [Bacillus paralicheniformis strain SYN-191]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=809271 P3X35_RS08030 WP_020451235.1 1584138..1584425(+) (abrB) [Bacillus paralicheniformis strain SYN-191]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTACGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCCGAA
TTGCTTTTGGAAGAAATAAAAGCTGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537