Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P3X35_RS06495 Genome accession   NZ_CP120920
Coordinates   1304701..1306530 (+) Length   609 a.a.
NCBI ID   WP_023856662.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SYN-191     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1299701..1311530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS06480 (P3X35_06480) - 1300884..1301603 (-) 720 WP_020450941.1 response regulator -
  P3X35_RS06485 (P3X35_06485) - 1301607..1303130 (-) 1524 WP_268915989.1 sensor histidine kinase -
  P3X35_RS06490 (P3X35_06490) - 1303340..1304488 (+) 1149 WP_080131320.1 competence protein CoiA family protein -
  P3X35_RS06495 (P3X35_06495) pepF 1304701..1306530 (+) 1830 WP_023856662.1 oligoendopeptidase F Regulator
  P3X35_RS06500 (P3X35_06500) - 1306588..1306755 (-) 168 WP_023856663.1 hypothetical protein -
  P3X35_RS06505 (P3X35_06505) spxH 1307167..1308069 (-) 903 WP_025811635.1 protease adaptor protein SpxH -
  P3X35_RS06510 (P3X35_06510) - 1308066..1308464 (-) 399 WP_003180652.1 thiol management oxidoreductase -
  P3X35_RS06515 (P3X35_06515) - 1308711..1308878 (+) 168 WP_186440203.1 hypothetical protein -
  P3X35_RS06520 (P3X35_06520) - 1308949..1309602 (-) 654 WP_277868605.1 lytic transglycosylase domain-containing protein -
  P3X35_RS06525 (P3X35_06525) - 1309615..1310187 (-) 573 WP_106070975.1 CYTH domain-containing protein -
  P3X35_RS06530 (P3X35_06530) - 1310318..1310683 (+) 366 WP_003180659.1 hypothetical protein -
  P3X35_RS06535 (P3X35_06535) - 1310715..1311350 (+) 636 WP_003180661.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70361.88 Da        Isoelectric Point: 4.8544

>NTDB_id=809266 P3X35_RS06495 WP_023856662.1 1304701..1306530(+) (pepF) [Bacillus paralicheniformis strain SYN-191]
MAEEKKSKKLPSREEVKQEDTWRLEDIFPSDDAWSEEFQAVKELLPKLSEFKGRLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKAANLYTQAASATAYMVPEILSIQEEKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGILAEASDVLSSSSNTFGMLNNADMEFPEITDENGEKVQLTHGNYVTFLESENRDVRRAAFKAVYETYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVSTINKHLPLLHRYVELRKKVLELDEVHMYDLYTPLVKDSGM
KVTYEQAKDYMLKGLTPLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYLLNTIDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHEIHSKAQ
EGEPLTPELLTSIYYDLNKKYFGDNIEIDKEIGLEWSRIPHFYYNYYVYQYATGFSAAQALSQQILKEGKSAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSEPIEAACKKFEEQLNEMEELLQKVNHS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=809266 P3X35_RS06495 WP_023856662.1 1304701..1306530(+) (pepF) [Bacillus paralicheniformis strain SYN-191]
GTGGCTGAAGAAAAAAAATCGAAGAAACTGCCTTCAAGAGAAGAGGTGAAGCAAGAAGACACGTGGAGACTTGAGGATAT
CTTCCCGTCAGATGATGCTTGGAGCGAGGAATTTCAAGCCGTTAAAGAACTGCTGCCCAAGCTTTCCGAATTCAAGGGCA
GGCTCGGCCATTCCGCCGATGATCTATATGAAGCGCTGACTTATCAGGATAAGGTGATGGAGCGTCTCGGGAAGCTGTAT
ACTTACGCTCACATGCGCTATGATCAGGATACTGGAAATTCTTTTTATCAAGGTCTCAATGATAAAGCGGCCAACCTCTA
TACCCAGGCTGCGAGCGCGACGGCCTACATGGTGCCGGAAATACTATCGATTCAAGAAGAAAAGCTTCAGCAGTTCCTGC
TGGAAAAAGAGGAGTTAAAGCTTTACTCGCATGCTCTCGAAGAAATCAATAAAGAGCGTCCTCACGTACTGAGCGAGGAG
GAGGAAGGAATTTTGGCCGAAGCGTCTGATGTTCTTTCATCTTCTTCCAACACGTTCGGCATGCTGAATAACGCTGATAT
GGAATTTCCGGAGATCACCGACGAAAATGGAGAAAAGGTACAGCTCACACACGGCAATTATGTCACCTTTTTGGAAAGCG
AGAACCGCGATGTCCGCCGCGCGGCATTCAAGGCGGTTTACGAAACATACGGCCGCTTTAAAAACACGCTCGCTTCCACG
CTCAGCGGAGCTGTGAAAAAAGACAACTTTTATGCGAAGGTTAAACATTATAAATCGGCGCGGGAAGCTGCTTTGTCGCG
AAACAGCATTCCTGAAGAAGTCTATGACAATCTTGTCAGCACGATCAACAAGCATCTCCCGCTTCTTCACCGCTATGTTG
AGCTTAGAAAAAAAGTGCTTGAGCTTGATGAGGTACACATGTATGACCTGTATACTCCGCTGGTAAAGGACTCTGGAATG
AAAGTTACCTACGAGCAGGCCAAGGACTATATGCTAAAAGGTTTGACGCCTTTAGGGGAAGAATATTCATCCATCCTGAA
AGAAGGCTTGAACAACCGCTGGGTCGATGTGTATGAAAACAAAGGAAAACGAAGCGGCGCTTATTCTTCAGGAACTTACG
GAACAAATCCGTATATTTTGATGAACTGGCAGGACAACGTCAATAATTTGTTTACGCTCGTCCATGAATTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCTTACCCGTACGGAAACTACAGCATTTTCGTAGCCGAAGTAGCTTCTAC
GACGAATGAAGCACTTTTGGGAGAATACTTGCTGAATACAATCGACGATGAAAAACAGCGGCTCTACATTTTGAATCATA
TGCTTGAAGGCTTCAAAGGAACGGTTTTCAGACAGACGATGTTTGCCGAATTTGAACATGAGATCCATAGCAAAGCCCAG
GAAGGGGAACCGCTGACACCTGAGCTGTTAACGAGCATCTACTATGATTTGAATAAGAAATATTTCGGTGACAATATTGA
GATTGATAAGGAAATCGGTCTTGAGTGGTCAAGAATACCGCATTTCTATTACAATTATTATGTGTATCAGTATGCGACAG
GCTTCAGTGCAGCTCAGGCACTCAGTCAGCAGATTTTAAAAGAAGGCAAATCGGCTGTTGACCGCTATATTGAGTTCTTG
AAAGCGGGTAGCTCGGATTATCCGATTGAAGTGCTGAAAAAAGCCGGTGTTGATATGACATCTTCGGAGCCGATCGAAGC
TGCGTGCAAAAAGTTTGAAGAGCAGCTGAACGAAATGGAAGAACTTTTGCAAAAAGTCAATCATTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.419

98.03

0.494