Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OO978_RS05570 Genome accession   NZ_AP026783
Coordinates   1131708..1132223 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain IPCEC31     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126708..1137223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO978_RS05525 (IPCEC31_10890) csrA 1127430..1127615 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  OO978_RS05555 (IPCEC31_10900) yqaB 1128938..1129504 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  OO978_RS05560 (IPCEC31_10910) yqaA 1129501..1129929 (+) 429 WP_001287457.1 YqaA family protein -
  OO978_RS05565 (IPCEC31_10920) gshA 1130002..1131558 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  OO978_RS05570 (IPCEC31_10930) luxS 1131708..1132223 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  OO978_RS05575 (IPCEC31_10940) emrB 1132287..1133825 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  OO978_RS05580 (IPCEC31_10950) emrA 1133842..1135014 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  OO978_RS05585 (IPCEC31_10960) emrR 1135141..1135671 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  OO978_RS05590 (IPCEC31_10970) ygaH 1135762..1136097 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  OO978_RS05595 (IPCEC31_10980) ygaZ 1136087..1136824 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=80926 OO978_RS05570 WP_001130207.1 1131708..1132223(+) (luxS) [Escherichia coli strain IPCEC31]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=80926 OO978_RS05570 WP_001130207.1 1131708..1132223(+) (luxS) [Escherichia coli strain IPCEC31]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment