Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   RMP64_RS10105 Genome accession   NZ_CP135093
Coordinates   2065583..2066032 (-) Length   149 a.a.
NCBI ID   WP_024387360.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2060583..2071032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS10085 (RMP64_10085) - 2060781..2061200 (+) 420 WP_044752435.1 hypothetical protein -
  RMP64_RS10090 (RMP64_10090) - 2061157..2061552 (+) 396 WP_044752434.1 ArpU family phage packaging/lysis transcriptional regulator -
  RMP64_RS10095 (RMP64_10095) - 2062099..2063883 (-) 1785 WP_024394879.1 ABC transporter ATP-binding protein -
  RMP64_RS10100 (RMP64_10100) - 2063884..2065590 (-) 1707 WP_024394878.1 ABC transporter ATP-binding protein -
  RMP64_RS10105 (RMP64_10105) rcrR 2065583..2066032 (-) 450 WP_024387360.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RMP64_RS10110 (RMP64_10110) - 2066254..2067270 (+) 1017 WP_012027922.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  RMP64_RS10115 (RMP64_10115) galU 2067315..2068214 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RMP64_RS10120 (RMP64_10120) - 2068232..2068909 (-) 678 WP_024387359.1 rhomboid family intramembrane serine protease -
  RMP64_RS10125 (RMP64_10125) - 2068893..2069435 (-) 543 WP_024387358.1 5-formyltetrahydrofolate cyclo-ligase -
  RMP64_RS10130 (RMP64_10130) - 2069476..2070603 (-) 1128 WP_024394877.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17580.11 Da        Isoelectric Point: 8.1233

>NTDB_id=809166 RMP64_RS10105 WP_024387360.1 2065583..2066032(-) (rcrR) [Streptococcus suis strain 1652329]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVANQLKENIKRYKETNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=809166 RMP64_RS10105 WP_024387360.1 2065583..2066032(-) (rcrR) [Streptococcus suis strain 1652329]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTGCGTTTCATAGCGGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ATATTGAAGCGGAGTTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGATAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTGGCTA
ATCAATTAAAAGAAAATATTAAACGTTATAAGGAGACGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416