Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   RMQ61_RS10900 Genome accession   NZ_CP135090
Coordinates   2228257..2228706 (-) Length   149 a.a.
NCBI ID   WP_172033243.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2223257..2233706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS10885 (RMQ61_10890) - 2223890..2224684 (+) 795 WP_024388513.1 formate/nitrite transporter family protein -
  RMQ61_RS10890 (RMQ61_10895) - 2224773..2226557 (-) 1785 WP_313920809.1 ABC transporter ATP-binding protein -
  RMQ61_RS10895 (RMQ61_10900) - 2226558..2228264 (-) 1707 WP_313920810.1 ABC transporter ATP-binding protein -
  RMQ61_RS10900 (RMQ61_10905) rcrR 2228257..2228706 (-) 450 WP_172033243.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RMQ61_RS10905 (RMQ61_10910) - 2228928..2229944 (+) 1017 WP_313920811.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  RMQ61_RS10910 (RMQ61_10915) galU 2229989..2230891 (+) 903 WP_313920812.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RMQ61_RS10915 (RMQ61_10920) - 2230920..2231597 (-) 678 WP_313920813.1 rhomboid family intramembrane serine protease -
  RMQ61_RS10920 (RMQ61_10925) - 2231581..2232123 (-) 543 WP_313920814.1 5-formyltetrahydrofolate cyclo-ligase -
  RMQ61_RS10925 (RMQ61_10930) - 2232164..2233291 (-) 1128 WP_044761664.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17466.96 Da        Isoelectric Point: 8.1233

>NTDB_id=809069 RMQ61_RS10900 WP_172033243.1 2228257..2228706(-) (rcrR) [Streptococcus suis strain ID48908]
MGHTIADFRNLLNQIEQISGTIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLVRQVADQLKENIKRYKETNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=809069 RMQ61_RS10900 WP_172033243.1 2228257..2228706(-) (rcrR) [Streptococcus suis strain ID48908]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGGAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCGGAACGGTCTGAAGCTGAGACTTTTGTCAAAG
ATATTGAAGCGGAGTTAAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGATAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGGTTAGACAAGTAGCCG
ATCAATTAAAAGAAAATATTAAACGTTATAAGGAGACGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416