Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RMQ61_RS06240 Genome accession   NZ_CP135090
Coordinates   1249147..1250955 (-) Length   602 a.a.
NCBI ID   WP_313926160.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1244147..1255955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS06220 (RMQ61_06225) murB 1244701..1245609 (-) 909 WP_014637975.1 UDP-N-acetylmuramate dehydrogenase -
  RMQ61_RS06225 (RMQ61_06230) thrB 1245844..1246704 (-) 861 WP_313926158.1 homoserine kinase -
  RMQ61_RS06230 (RMQ61_06235) - 1246708..1247994 (-) 1287 WP_313926159.1 homoserine dehydrogenase -
  RMQ61_RS06235 (RMQ61_06240) - 1248099..1249022 (+) 924 WP_024406306.1 polysaccharide deacetylase family protein -
  RMQ61_RS06240 (RMQ61_06245) rcrQ 1249147..1250955 (-) 1809 WP_313926160.1 ABC transporter ATP-binding protein Regulator
  RMQ61_RS06245 (RMQ61_06250) rcrP 1250964..1252700 (-) 1737 WP_313926161.1 ABC transporter ATP-binding protein Regulator
  RMQ61_RS06250 (RMQ61_06255) - 1252776..1253018 (-) 243 WP_012028079.1 KH domain-containing protein -
  RMQ61_RS06255 (RMQ61_06260) rpsP 1253040..1253312 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  RMQ61_RS06260 (RMQ61_06265) - 1253436..1253744 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  RMQ61_RS06265 (RMQ61_06270) pcp 1253744..1254391 (-) 648 WP_024411282.1 pyroglutamyl-peptidase I -
  RMQ61_RS06270 (RMQ61_06275) - 1254388..1255143 (-) 756 WP_024413953.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67177.42 Da        Isoelectric Point: 5.7979

>NTDB_id=809035 RMQ61_RS06240 WP_313926160.1 1249147..1250955(-) (rcrQ) [Streptococcus suis strain ID48908]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGVEGAQINYSYIAIMLALYALR
ALMYEIGAYGSTYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
SDLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLAGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSQSNTLRKSKADVVDSL

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=809035 RMQ61_RS06240 WP_313926160.1 1249147..1250955(-) (rcrQ) [Streptococcus suis strain ID48908]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTACTGGGGCTTATCATCACAGAATTGACCAAGAATCTGT
TGGATATGGCAAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCGCTCTATGCACTTCGT
GCCCTTATGTATGAAATCGGCGCCTATGGTTCTACCTATTTCATGACTAAGGCGGTACAGGGAGCAACCAAGGAACTGCG
GCAGGATTTGAGTCACAAGATTAACAAGATTCCTGTTTCTTATTTTGACAAGCACCAGTATGGTGATTTGCTAGGTCGTT
TTACAAGCGATGTGGAGACTGTGTCGAATGCTCTGCAACAAAGTTTCCTTCAGTTAGTCAATGCCGTTCTGACTCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTCGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAGCCTTATTTCAAGCAACAGGCTGATGCCCTAGGTCGATTGAACGGCTTTGTCC
AAGAAAATCTGACAGGTTTTAACGTTCTCAAACTCTACGGTCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
TCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCTGGTTTGCTCATGCCTCTGGTACACGGCTTATCGAACAT
TGCCTATGTAGTCGTGGCCTTACTTGCTGGTCTGAAAGTTCTTGCGGGTACATTGACAGTTGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGACGAAGAAGACGCCAATGCGCTAGAGTTGACAGCTAGTCTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTCGGCTATTCAGAAGATAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTGGCCATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCCGGTGCTATCAAGGTGGATGGTCAGGATATTCGAAACATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCCTGGCTCTACGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTAGATGCGACGGATGAGG
AAATTGTGGAGGCTGCCAAAGCAGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCCATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACTCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCCCACCGTTTATCAACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAATCATGAAAGTCTTTTGGCAGATAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGTCA
ATCTAATACTCTTCGAAAATCAAAAGCAGACGTTGTTGACTCGCTTTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.147

98.173

0.424