Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RMQ61_RS05915 Genome accession   NZ_CP135090
Coordinates   1182868..1183533 (+) Length   221 a.a.
NCBI ID   WP_313921426.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1177868..1188533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS05885 (RMQ61_05890) - 1178815..1178955 (+) 141 WP_313926593.1 hypothetical protein -
  RMQ61_RS05890 (RMQ61_05895) - 1178968..1179357 (+) 390 WP_313926594.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  RMQ61_RS05895 (RMQ61_05900) - 1179366..1180118 (+) 753 WP_029173099.1 ABC transporter ATP-binding protein -
  RMQ61_RS05900 (RMQ61_05905) - 1180119..1182089 (+) 1971 WP_313926595.1 FtsX-like permease family protein -
  RMQ61_RS05905 (RMQ61_05910) relB 1182325..1182576 (+) 252 WP_024380669.1 type II toxin-antitoxin system RelB family antitoxin -
  RMQ61_RS05910 (RMQ61_05915) - 1182560..1182826 (+) 267 WP_024405694.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RMQ61_RS05915 (RMQ61_05920) braR 1182868..1183533 (+) 666 WP_313921426.1 response regulator transcription factor Regulator
  RMQ61_RS05920 (RMQ61_05925) - 1183530..1184471 (+) 942 WP_313921427.1 sensor histidine kinase -
  RMQ61_RS05925 (RMQ61_05930) - 1184547..1186055 (+) 1509 WP_313921428.1 phosphomannomutase/phosphoglucomutase -
  RMQ61_RS05930 (RMQ61_05935) xerS 1186125..1187195 (-) 1071 WP_313921429.1 tyrosine recombinase XerS Machinery gene
  RMQ61_RS05935 (RMQ61_05940) - 1187361..1187882 (-) 522 WP_313921430.1 AAA family ATPase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25460.22 Da        Isoelectric Point: 4.7736

>NTDB_id=809032 RMQ61_RS05915 WP_313921426.1 1182868..1183533(+) (braR) [Streptococcus suis strain ID48908]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVVEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSSDLSIDQFQLSLDGRFSNESEQVQLSPTETKILS
ALLERQGQIVSKDELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=809032 RMQ61_RS05915 WP_313921426.1 1182868..1183533(+) (braR) [Streptococcus suis strain ID48908]
ATGAAAAAAGAAAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCTTA
TCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGTGGAAATCAAACCAGACTTAGTGCTGATGGACA
TTAACTTGCCCTATTACAACGGTTTTTATTGGACAACGGAAATCCGTAAAACCATGACCATGCCAATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTTTCTAAGCCTTTTTCACTAGG
GATTTTGGATGCCAAAATCGGAGCCTTCCTGCGTCGGGTTAATCAATTCAGCAAATCGAGCGATTTGTCTATCGACCAGT
TCCAGCTTAGTTTGGACGGGCGATTTTCAAACGAATCAGAACAGGTTCAATTATCTCCAACAGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGATGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATCGA
CCAGAATACGCTCAATGTAAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.548

0.475