Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   P4B34_RS23645 Genome accession   NZ_CP120859
Coordinates   4920903..4921538 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain NY4383     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4915903..4926538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B34_RS23615 (P4B34_23635) murB 4917001..4918020 (-) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -
  P4B34_RS23620 (P4B34_23640) - 4918017..4918481 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  P4B34_RS23625 (P4B34_23645) kdsB 4918481..4919245 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P4B34_RS23630 (P4B34_23650) - 4919245..4919430 (-) 186 WP_003091157.1 Trm112 family protein -
  P4B34_RS23635 (P4B34_23655) lpxK 4919468..4920466 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  P4B34_RS23640 (P4B34_23660) - 4920466..4920906 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  P4B34_RS23645 (P4B34_23665) exbB 4920903..4921538 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P4B34_RS23650 (P4B34_23670) comA 4921611..4923836 (-) 2226 WP_014603928.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P4B34_RS23655 (P4B34_23675) - 4923967..4924500 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  P4B34_RS23660 (P4B34_23680) - 4924588..4925832 (-) 1245 WP_003091166.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=809010 P4B34_RS23645 WP_003091163.1 4920903..4921538(-) (exbB) [Pseudomonas aeruginosa strain NY4383]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=809010 P4B34_RS23645 WP_003091163.1 4920903..4921538(-) (exbB) [Pseudomonas aeruginosa strain NY4383]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81