Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   JG738_RS07705 Genome accession   NZ_AP023063
Coordinates   1422923..1424725 (+) Length   600 a.a.
NCBI ID   WP_201337333.1    Uniprot ID   -
Organism   Nitratiruptor sp. YY08-26     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417923..1429725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG738_RS07685 (NitYY0826_C1546) guaA 1418097..1419647 (-) 1551 WP_201337327.1 glutamine-hydrolyzing GMP synthase -
  JG738_RS07690 (NitYY0826_C1547) nhaD 1419658..1420959 (-) 1302 WP_084276468.1 sodium:proton antiporter NhaD -
  JG738_RS07695 (NitYY0826_C1548) nadB 1420970..1422406 (-) 1437 WP_201337329.1 L-aspartate oxidase -
  JG738_RS07700 (NitYY0826_C1550) - 1422496..1422948 (+) 453 WP_201337331.1 hypothetical protein -
  JG738_RS07705 (NitYY0826_C1551) uvrC 1422923..1424725 (+) 1803 WP_201337333.1 excinuclease ABC subunit UvrC Machinery gene
  JG738_RS07710 (NitYY0826_C1552) - 1424788..1426233 (+) 1446 WP_201337335.1 Hpt domain-containing protein -
  JG738_RS07715 (NitYY0826_C1553) - 1426244..1429342 (+) 3099 WP_201337336.1 ATP-binding protein -
  JG738_RS07720 (NitYY0826_C1554) - 1429339..1429716 (+) 378 WP_084276475.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69276.51 Da        Isoelectric Point: 10.0519

>NTDB_id=80899 JG738_RS07705 WP_201337333.1 1422923..1424725(+) (uvrC) [Nitratiruptor sp. YY08-26]
MQQLKEKIKKLPDQPGVYQYFDAQGRLLYIGKAKSLKKRVKSYFRFTPFTPAPNLSPRIYKMVSEIKNLEYIVVSSENDA
LILENSLIKQLKPKYNILLRDDKTYPYIYVDFAQEFPRLKITRKVLAGKKVKYFGPFPSAAKDIVNSIYEIFPLVQKESC
IKGKKACLFYQMQKCLAPCEGKISKEKYRKILDEAIAHIHNKKLLLQKLEQKMLALSAQLRFEEAAQIRDRIDKIRAIEI
QSEIDFAKLQDIDVYAIASDKTQAAIVRMFMREGKVVASSSNIVRIDEYKGFDKEEAYKRVLLEFYTTQTPLTASLIVVA
EEFEAREELENFLSQKFNKKITITHPKRGEKRRLADIAQLNAKEILAKSKPKSDIEEQLQNLLDLNSKPYRIEVFDNSHI
SGSVPVGAMIVYENGAFDKKSYRHYNLHTQDEYAQMKELLTHRCESFAKNPPPDMWLIDGGETLRRLAQDIAQSFGVSID
VIAIAKEKIDAKAHRAKGEAKDIIYTQNGVLRLLPTDKRLQFLQKLRDEAHRFATTFHRKQRSKKAKELELLKISGIGEA
KIRKLLNYFGSFENIRLASEEELSDVLNKKDAKNIKKSLN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=80899 JG738_RS07705 WP_201337333.1 1422923..1424725(+) (uvrC) [Nitratiruptor sp. YY08-26]
ATGCAGCAGCTCAAAGAGAAGATTAAAAAGCTCCCTGACCAACCAGGCGTCTATCAATATTTTGATGCTCAGGGAAGACT
GCTTTATATCGGCAAAGCTAAAAGCCTCAAAAAAAGGGTCAAAAGCTATTTTCGCTTCACCCCATTTACACCAGCTCCAA
ACCTCTCACCTCGCATATATAAAATGGTAAGTGAGATCAAAAATCTCGAATATATTGTTGTCTCTTCTGAAAATGATGCT
TTGATACTCGAAAACTCCCTTATTAAACAGCTCAAACCAAAATATAACATTCTCTTGCGTGATGATAAAACCTATCCCTA
TATTTATGTAGATTTTGCGCAAGAATTTCCAAGGCTAAAAATTACACGCAAAGTTCTTGCAGGCAAAAAGGTAAAATATT
TTGGTCCATTTCCTAGTGCAGCAAAAGATATTGTAAACTCTATTTATGAAATATTTCCCCTTGTGCAAAAAGAGTCCTGC
ATAAAAGGAAAAAAAGCATGCCTCTTTTATCAGATGCAAAAATGCCTTGCACCGTGCGAGGGAAAAATTTCAAAAGAGAA
GTATAGAAAAATTCTCGATGAAGCGATTGCACATATCCACAATAAAAAACTGCTTTTGCAAAAACTTGAGCAAAAGATGC
TTGCACTCTCTGCGCAACTGCGCTTTGAAGAGGCTGCTCAGATAAGGGATCGCATAGATAAAATTCGCGCTATTGAGATC
CAAAGTGAAATAGATTTTGCAAAACTCCAAGATATAGATGTTTACGCTATTGCTTCAGACAAAACCCAAGCTGCAATCGT
AAGAATGTTTATGCGCGAAGGAAAAGTAGTAGCTAGCAGCTCAAATATTGTGCGCATTGATGAGTATAAAGGTTTTGACA
AAGAAGAGGCTTATAAAAGAGTACTTTTAGAGTTTTATACTACACAAACTCCGCTTACTGCTTCTTTGATAGTAGTTGCC
GAGGAATTTGAAGCAAGAGAGGAGTTAGAGAATTTTTTAAGTCAAAAATTTAACAAAAAAATAACTATAACACACCCCAA
GAGAGGCGAAAAGCGAAGACTTGCAGATATCGCGCAACTCAATGCAAAAGAGATTCTTGCAAAAAGCAAACCAAAAAGCG
ATATTGAAGAACAACTCCAAAACCTTTTAGATCTTAACAGTAAACCCTACCGCATAGAGGTTTTTGACAACTCTCACATC
AGCGGCTCCGTTCCAGTTGGAGCGATGATAGTCTATGAAAATGGAGCATTTGATAAAAAAAGTTACCGCCACTATAATCT
GCACACGCAAGATGAATATGCACAGATGAAAGAACTCCTCACTCATAGATGTGAGAGTTTTGCAAAAAATCCTCCCCCAG
ATATGTGGCTTATTGATGGGGGTGAGACACTCAGAAGACTTGCACAAGATATTGCGCAAAGCTTCGGTGTATCTATCGAT
GTCATAGCAATTGCAAAAGAGAAGATCGATGCCAAGGCTCATAGAGCAAAAGGAGAGGCAAAAGATATTATCTATACACA
AAATGGCGTTCTTCGACTCCTTCCAACAGACAAAAGATTACAATTTTTACAAAAATTACGGGATGAAGCACATAGATTTG
CCACTACTTTTCATCGCAAACAGCGCAGTAAAAAAGCTAAAGAGCTTGAACTACTCAAAATCTCTGGTATAGGAGAAGCA
AAAATTCGCAAACTTCTAAACTATTTTGGAAGTTTTGAAAATATTCGCTTAGCCAGTGAAGAGGAACTATCAGATGTCCT
TAACAAAAAAGATGCAAAAAATATCAAAAAAAGCCTCAATTAA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(205-237)

Helix-hairpin-helix domain (HHH_5)

(550-599)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

53.109

99.167

0.527

Multiple sequence alignment