Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RMP65_RS06255 Genome accession   NZ_CP135089
Coordinates   1264296..1266509 (-) Length   737 a.a.
NCBI ID   WP_044778542.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1259296..1271509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS06225 (RMP65_06225) - 1259423..1260217 (-) 795 WP_024390150.1 Nif3-like dinuclear metal center hexameric protein -
  RMP65_RS06230 (RMP65_06230) - 1260207..1260890 (-) 684 WP_044670584.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  RMP65_RS06235 (RMP65_06235) - 1260892..1261566 (-) 675 WP_002937132.1 DnaD domain-containing protein -
  RMP65_RS06240 (RMP65_06240) metA 1261576..1262517 (-) 942 WP_044778544.1 homoserine O-succinyltransferase -
  RMP65_RS06245 (RMP65_06245) - 1262621..1263133 (-) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  RMP65_RS06250 (RMP65_06250) - 1263148..1264317 (-) 1170 WP_044778543.1 DUF3114 domain-containing protein -
  RMP65_RS06255 (RMP65_06255) recJ 1264296..1266509 (-) 2214 WP_044778542.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RMP65_RS06260 (RMP65_06260) cls 1266666..1268213 (-) 1548 WP_024395267.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82722.41 Da        Isoelectric Point: 4.4824

>NTDB_id=808943 RMP65_RS06255 WP_044778542.1 1264296..1266509(-) (recJ) [Streptococcus suis strain ID34567]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKNMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEITKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAVYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKEAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=808943 RMP65_RS06255 WP_044778542.1 1264296..1266509(-) (recJ) [Streptococcus suis strain ID34567]
GTGATAAAACCCAATTATGACTGGCAATTACTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTGGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGTATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCTAACCGTTTCACAGATGGCTATGGGCCGAATCAGTCAGTTTACAAGTATT
TTATCGAGCAACAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAGGGAAATTATCCCTTCAAACATTTGGCGGGCTGCGGCGTGGCTTTTAAATTGGCCTGTGCTCTTCTTG
AAACTGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGATGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCCCTCATGATTGACAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAAACATGCTCCGTCAGGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCAGCAACCTGTTATCG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCGGTTGAAGCAGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTAACCTTGACAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAATCAGCAAGAACTATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCAGGATTTGATGTCGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAGCAACATCCTATTCCTGCAGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAATGAAATTACCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAAACCATTTACCAATTTGATGAGTTTGATGTTCGCTACAAACTGAAAGATTTGGCTGTTTACTTAAAAATTAA
GGACAGTCTATTGGTTAAAATGATTCAGATTTTCCAAGAATTAGAATTTGTCACGATTACGGATGGGGTCATGCGGGTCA
ACAAAGAGGCACAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)

DHHA1 domain (DHHA1)

(317-432)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.69

99.864

0.726
  recJ Bacillus subtilis subsp. subtilis str. 168

38.235

100

0.388