Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   P4B31_RS09770 Genome accession   NZ_CP120857
Coordinates   2069249..2072008 (+) Length   919 a.a.
NCBI ID   WP_019726534.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY7570     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2072156..2084627 2069249..2072008 flank 148


Gene organization within MGE regions


Location: 2069249..2084627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B31_RS09770 (P4B31_09765) fimV 2069249..2072008 (+) 2760 WP_019726534.1 motility hub landmark protein FimV Machinery gene
  P4B31_RS09775 (P4B31_09770) - 2072156..2073205 (-) 1050 WP_042929192.1 tyrosine-type recombinase/integrase -
  P4B31_RS09780 (P4B31_09775) - 2073205..2073447 (-) 243 WP_034014245.1 DUF4224 domain-containing protein -
  P4B31_RS09785 (P4B31_09780) - 2073431..2073754 (-) 324 WP_034014244.1 ClpX C4-type zinc finger protein -
  P4B31_RS09790 (P4B31_09785) - 2073757..2074596 (-) 840 WP_051488605.1 hypothetical protein -
  P4B31_RS09795 (P4B31_09790) - 2074593..2074838 (-) 246 WP_034014243.1 hypothetical protein -
  P4B31_RS09800 (P4B31_09795) - 2074835..2075014 (-) 180 WP_034014242.1 hypothetical protein -
  P4B31_RS09805 (P4B31_09800) - 2075011..2075202 (-) 192 WP_050159539.1 hypothetical protein -
  P4B31_RS09810 (P4B31_09805) - 2075202..2075324 (-) 123 WP_015648185.1 hypothetical protein -
  P4B31_RS09815 (P4B31_09810) - 2075321..2076007 (-) 687 WP_309253427.1 hypothetical protein -
  P4B31_RS09820 (P4B31_09815) - 2076010..2076240 (-) 231 WP_023099127.1 Arc family DNA-binding protein -
  P4B31_RS09825 (P4B31_09820) - 2076282..2077118 (-) 837 WP_003129627.1 prohibitin family protein -
  P4B31_RS09830 (P4B31_09825) - 2077115..2077369 (-) 255 WP_252126742.1 hypothetical protein -
  P4B31_RS09835 (P4B31_09830) - 2077469..2077702 (-) 234 WP_021205288.1 hypothetical protein -
  P4B31_RS09840 (P4B31_09835) - 2077705..2078091 (-) 387 WP_003085698.1 response regulator transcription factor -
  P4B31_RS09845 (P4B31_09845) - 2078411..2078749 (-) 339 WP_003085700.1 hypothetical protein -
  P4B31_RS09850 (P4B31_09850) - 2078767..2079060 (-) 294 WP_019396631.1 hypothetical protein -
  P4B31_RS09855 (P4B31_09855) - 2079173..2079946 (-) 774 WP_033969092.1 helix-turn-helix transcriptional regulator -
  P4B31_RS09860 (P4B31_09860) - 2080035..2080373 (+) 339 WP_126605023.1 hypothetical protein -
  P4B31_RS09865 (P4B31_09865) - 2080370..2080762 (+) 393 WP_003085704.1 hypothetical protein -
  P4B31_RS09870 (P4B31_09870) - 2081068..2081385 (+) 318 WP_203305972.1 hypothetical protein -
  P4B31_RS09875 (P4B31_09875) - 2081382..2081660 (+) 279 WP_042929100.1 hypothetical protein -
  P4B31_RS09880 (P4B31_09880) - 2081657..2081980 (+) 324 WP_309253428.1 hypothetical protein -
  P4B31_RS09885 (P4B31_09885) - 2081977..2082468 (+) 492 WP_023086955.1 hypothetical protein -
  P4B31_RS09890 (P4B31_09890) - 2082465..2083259 (+) 795 WP_023086956.1 hypothetical protein -
  P4B31_RS09895 (P4B31_09895) - 2083256..2083564 (+) 309 WP_023086957.1 hypothetical protein -
  P4B31_RS09900 (P4B31_09900) - 2083561..2083791 (+) 231 WP_023086958.1 hypothetical protein -
  P4B31_RS09905 (P4B31_09905) - 2083788..2084627 (+) 840 WP_023086959.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 919 a.a.        Molecular weight: 96961.17 Da        Isoelectric Point: 3.9423

>NTDB_id=808934 P4B31_RS09770 WP_019726534.1 2069249..2072008(+) (fimV) [Pseudomonas aeruginosa strain NY7570]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADTGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLDGDDVQADLKSDSGALDDLTLDSDLDLAASTAADKPVDDL
DFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSL
ADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=808934 P4B31_RS09770 WP_019726534.1 2069249..2072008(+) (fimV) [Pseudomonas aeruginosa strain NY7570]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAGCTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAATCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGAAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGACAGCACTCGCCGCGAGAACGAAGAACTGCAGAGTCGCATGCAGGATCTGCAGAGCCAGTT
GGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCGGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCTGCTGCGGCAGCGCCGACTCCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAGCAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATACCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGTCG
CTCCGCAGGTCGAGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTATCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAG
GACGAGCTGGATAGCTTCAGCCTCGACGATCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA
GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGACGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCG
GGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGA
TCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAAGTGCCCGCCGCGGCGCCCG
CCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAAGATGCAGCGGTCGCCT
CCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCT
CGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

99.674

100

0.997