Detailed information NTG0808882

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: P4829_RS19185
• Genome accession: NZ_CP120846
• Coordinates: 3787498..3788640 (+)
• Length: 380 a.a.
• NCBI ID: WP_063638168.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain MBLB1156
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3782498..3793640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4829_RS19165 (P4829_19165)	-	3782963..3783664 (+)	702	WP_063638165.1	hypothetical protein	-
P4829_RS19170 (P4829_19170)	-	3783671..3785047 (-)	1377	WP_063638166.1	YncE family protein	-
P4829_RS19175 (P4829_19175)	-	3785087..3786448 (-)	1362	WP_010790243.1	YncE family protein	-
P4829_RS19180 (P4829_19180)	-	3786731..3787285 (+)	555	WP_063638167.1	YdhK family protein	-
P4829_RS19185 (P4829_19185)	rapF	3787498..3788640 (+)	1143	WP_063638168.1	tetratricopeptide repeat protein	Regulator
P4829_RS19190 (P4829_19190)	-	3788624..3788743 (+)	120	WP_003326489.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
P4829_RS19195 (P4829_19195)	-	3788842..3789307 (+)	466	Protein_3732	YbaK/EbsC family protein	-
P4829_RS19200 (P4829_19200)	speB	3789346..3790218 (-)	873	WP_063638169.1	agmatinase	-
P4829_RS19205 (P4829_19205)	speE	3790279..3791109 (-)	831	WP_003326486.1	spermidine synthase	-
P4829_RS19210 (P4829_19210)	-	3791314..3793389 (+)	2076	WP_063638170.1	transglycosylase domain-containing protein	-
P4829_RS19215 (P4829_19215)	-	3793461..3793634 (-)	174	WP_196761751.1	hypothetical protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45465.26 Da
• Isoelectric Point: 5.2501

>NTDB_id=808882 P4829_RS19185 WP_063638168.1 3787498..3788640(+) (rapF) [Bacillus atrophaeus strain MBLB1156]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQIAEDQDIYLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGLLEYYFNFFRGMYELDHREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVSM
DYARQAFEIYNEQTTYGIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAEQQPQLMGRTLYNIALCKQNQHSFESA
IEYVKKSIHVFEKSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSIAAGDTVYLMEFEFLESLYLSGPDEEAIK
KCFVFLESKMMYADIEDFALDVAKYYHQQECYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1143 bp

>NTDB_id=808882 P4829_RS19185 WP_063638168.1 3787498..3788640(+) (rapF) [Bacillus atrophaeus strain MBLB1156]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATAGCAGAAGACCAGGATATTTATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGACTG
TCCGATTTGCTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTATTTTAATTTCTTCAGAGG
TATGTATGAGCTGGACCACCGCGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTGTTA
AAGATAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCCATG
GACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGGTATCAGAATGATTCAATGCCAGTCCCTGTT
TGGAGCTAATTTTTTGGACCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGGCAG
AACAGCAGCCGCAACTAATGGGAAGAACGCTTTATAATATTGCCCTTTGCAAGCAAAACCAACACAGCTTTGAATCAGCG
ATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAAAATCTAAAATGCTTCCTTCACTGCCACAAGCCTTTTTCCTAAT
TACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAGCTG
CCGGAGACACTGTGTATTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAAGCAATCAAA
AAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTATCA
TCAGCAGGAATGTTATAAAAAAGCATCTACTTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGGTGA
ATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (188-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.265	100	0.795
rapC	Bacillus subtilis subsp. subtilis str. 168	56.579	100	0.566