Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P4829_RS13295 Genome accession   NZ_CP120846
Coordinates   2632648..2633415 (-) Length   255 a.a.
NCBI ID   WP_004429489.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2627648..2638415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS13275 (P4829_13275) - 2627806..2628618 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  P4829_RS13280 (P4829_13280) ccpN 2628644..2629282 (-) 639 WP_035175504.1 transcriptional regulator CcpN -
  P4829_RS13285 (P4829_13285) glyS 2629430..2631469 (-) 2040 WP_010789233.1 glycine--tRNA ligase subunit beta -
  P4829_RS13290 (P4829_13290) glyQ 2631462..2632349 (-) 888 WP_010789234.1 glycine--tRNA ligase subunit alpha -
  P4829_RS13295 (P4829_13295) recO 2632648..2633415 (-) 768 WP_004429489.1 DNA repair protein RecO Machinery gene
  P4829_RS13300 (P4829_13300) - 2633452..2633595 (-) 144 WP_004429487.1 YqzL family protein -
  P4829_RS13305 (P4829_13305) era 2633752..2634657 (-) 906 WP_004429485.1 GTPase Era -
  P4829_RS13310 (P4829_13310) - 2634638..2635048 (-) 411 WP_010789236.1 cytidine deaminase -
  P4829_RS13315 (P4829_13315) - 2635162..2635539 (-) 378 WP_004429481.1 diacylglycerol kinase family protein -
  P4829_RS13320 (P4829_13320) ybeY 2635520..2635993 (-) 474 WP_010789237.1 rRNA maturation RNase YbeY -
  P4829_RS13325 (P4829_13325) - 2635994..2638128 (-) 2135 Protein_2588 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29196.91 Da        Isoelectric Point: 8.5598

>NTDB_id=808858 P4829_RS13295 WP_004429489.1 2632648..2633415(-) (recO) [Bacillus atrophaeus strain MBLB1156]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGIDPDVITFIVQMKMLGVIGLYPELNHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=808858 P4829_RS13295 WP_004429489.1 2632648..2633415(-) (recO) [Bacillus atrophaeus strain MBLB1156]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATCAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAGAGGCTTAATGAAGGAATCGACCCCGATGTCATTACCTTCA
TCGTTCAAATGAAAATGCTGGGTGTAATAGGATTGTATCCTGAACTTAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGATTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTATTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAAGATGAGCTAAAACGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.549

100

0.925