Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RMP67_RS07415 Genome accession   NZ_CP135087
Coordinates   1498075..1500288 (-) Length   737 a.a.
NCBI ID   WP_313919232.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1493075..1505288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS07385 (RMP67_07385) - 1493205..1493999 (-) 795 WP_313919221.1 Nif3-like dinuclear metal center hexameric protein -
  RMP67_RS07390 (RMP67_07390) - 1493989..1494672 (-) 684 WP_313919224.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  RMP67_RS07395 (RMP67_07395) - 1494674..1495348 (-) 675 WP_313919226.1 DnaD domain-containing protein -
  RMP67_RS07400 (RMP67_07400) metA 1495358..1496299 (-) 942 WP_313919228.1 homoserine O-succinyltransferase -
  RMP67_RS07405 (RMP67_07405) - 1496403..1496915 (-) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  RMP67_RS07410 (RMP67_07410) - 1496930..1498096 (-) 1167 WP_313919230.1 DUF3114 domain-containing protein -
  RMP67_RS07415 (RMP67_07415) recJ 1498075..1500288 (-) 2214 WP_313919232.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RMP67_RS07420 (RMP67_07420) cls 1500444..1501991 (-) 1548 WP_002937141.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82637.30 Da        Isoelectric Point: 4.4824

>NTDB_id=808853 RMP67_RS07415 WP_313919232.1 1498075..1500288(-) (recJ) [Streptococcus suis strain ID26102]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAGYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKEAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=808853 RMP67_RS07415 WP_313919232.1 1498075..1500288(-) (recJ) [Streptococcus suis strain ID26102]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGCATGACCTCGGCATCTATTCTGAAAGAAACTTTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAACCGTTTCACAGACGGCTATGGGCCGAATCAGTCAGTTTACAAGTATT
TTATTGAGCAGCAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAGGGAAATTATCCCTTCAAACATTTGGCGGGATGCGGTGTAGCTTTCAAATTGGCCTGTGCTCTTCTTG
AAACCGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGTACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGACGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCTCTCATGATTGATAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCAGGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCAGCAACCTGTTATCG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCGGTTGAAGCAGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTAACCTTGACAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAATCAGCAAGGACCATGGGGCAAAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCAGGATTTGATGTCGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAC
GGTGTTCAACTTTATAATATTCGTGGAAAACAACATCCTATTCCTGCAGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAACGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAGACTATTTACCAATTTGATGAGTTTGATGTTCGCTACAAACTGAAAGATTTGGCTGGTTACTTAAAAATTAA
GGACAGTCTATTGGTTAAAATGATTCAGATTTTCCAAGAATTAGAATTTGTCACGATTACGGATGGGGTCATGCGGGTCA
ACAAAGAGGCACAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-432)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.826

99.864

0.727
  recJ Bacillus subtilis subsp. subtilis str. 168

38.235

100

0.388