Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P4829_RS08090 Genome accession   NZ_CP120846
Coordinates   1561371..1561649 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556371..1566649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS08070 (P4829_08070) - 1557566..1558480 (+) 915 WP_010788480.1 ketopantoate reductase family protein -
  P4829_RS08075 (P4829_08075) - 1558511..1559743 (-) 1233 WP_010788481.1 aminopeptidase -
  P4829_RS08080 (P4829_08080) - 1559845..1559979 (-) 135 WP_010788482.1 protein YkpC -
  P4829_RS08085 (P4829_08085) mreBH 1560081..1561088 (-) 1008 WP_035175453.1 cell shape-determining protein MreBH -
  P4829_RS08090 (P4829_08090) abrB 1561371..1561649 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  P4829_RS08095 (P4829_08095) - 1561862..1563148 (+) 1287 WP_003329145.1 ATP-binding protein -
  P4829_RS08100 (P4829_08100) - 1563161..1564000 (+) 840 WP_010788484.1 gamma-glutamylcyclotransferase -
  P4829_RS08105 (P4829_08105) ktrC 1564050..1564715 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  P4829_RS08110 (P4829_08110) ade 1564885..1566612 (+) 1728 WP_063637630.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=808841 P4829_RS08090 WP_003329146.1 1561371..1561649(+) (abrB) [Bacillus atrophaeus strain MBLB1156]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=808841 P4829_RS08090 WP_003329146.1 1561371..1561649(+) (abrB) [Bacillus atrophaeus strain MBLB1156]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTAT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAAGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576