Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   P4829_RS07860 Genome accession   NZ_CP120846
Coordinates   1519747..1520211 (-) Length   154 a.a.
NCBI ID   WP_003327274.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1514747..1525211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS07840 (P4829_07840) - 1515194..1517014 (+) 1821 WP_063637617.1 PAS domain-containing protein -
  P4829_RS07845 (P4829_07845) - 1517037..1518206 (-) 1170 WP_063637618.1 aminotransferase A -
  P4829_RS07850 (P4829_07850) - 1518412..1518573 (-) 162 WP_003327276.1 hypothetical protein -
  P4829_RS07855 (P4829_07855) cheV 1518782..1519693 (+) 912 WP_063637619.1 chemotaxis protein CheV -
  P4829_RS07860 (P4829_07860) kre 1519747..1520211 (-) 465 WP_003327274.1 YkyB family protein Regulator
  P4829_RS07865 (P4829_07865) - 1520334..1521629 (-) 1296 WP_063637620.1 MFS transporter -
  P4829_RS07870 (P4829_07870) - 1521705..1522202 (-) 498 WP_087941879.1 L,D-transpeptidase family protein -
  P4829_RS07875 (P4829_07875) - 1522338..1523198 (-) 861 WP_063637621.1 metallophosphoesterase -
  P4829_RS07880 (P4829_07880) fadH 1523345..1524109 (+) 765 WP_003327269.1 2,4-dienoyl-CoA reductase -
  P4829_RS07885 (P4829_07885) - 1524159..1524293 (+) 135 Protein_1503 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17942.68 Da        Isoelectric Point: 10.4207

>NTDB_id=808839 P4829_RS07860 WP_003327274.1 1519747..1520211(-) (kre) [Bacillus atrophaeus strain MBLB1156]
MDDHAYTKDLRPTIENLSKAVYTVNRHAKTAPNPKYLYTLKKRALQKLVKEGKGKKVGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKNLLQDYVGMKEKPFVTNRQQPTYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=808839 P4829_RS07860 WP_003327274.1 1519747..1520211(-) (kre) [Bacillus atrophaeus strain MBLB1156]
ATGGACGACCATGCATATACGAAAGATCTGCGGCCAACCATCGAAAATCTTTCAAAAGCTGTCTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATACTTTGAAAAAACGGGCTTTACAAAAGCTGGTGAAAGAAGGTAAAG
GAAAGAAAGTAGGGCTTCATTTTTCAAAAAATCCAAGGTTTAGCCAACAGCAATCGGACGTGCTCATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCGAACACCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGGAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAAAACCTTTTGCAAGATTATGTCGGCATGAAAGAAAAACCGTTTGTCA
CAAATCGGCAGCAGCCAACTTACCATAAACCTGTTTTCAAAAAGCTTGGAGAAAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

94.156

100

0.942