Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P4829_RS06790 Genome accession   NZ_CP120846
Coordinates   1325530..1325955 (+) Length   141 a.a.
NCBI ID   WP_081250945.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1320530..1330955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS06755 (P4829_06755) - 1321046..1321273 (+) 228 WP_231104726.1 hypothetical protein -
  P4829_RS06760 (P4829_06760) - 1322525..1322782 (+) 258 WP_035175442.1 hypothetical protein -
  P4829_RS06765 (P4829_06765) - 1322928..1323014 (-) 87 WP_073991391.1 YjcZ family sporulation protein -
  P4829_RS06770 (P4829_06770) - 1323196..1323519 (+) 324 Protein_1279 phage terminase small subunit-related protein -
  P4829_RS21095 - 1323536..1323777 (+) 242 Protein_1280 DUF1433 domain-containing protein -
  P4829_RS06775 (P4829_06775) - 1324011..1324280 (-) 270 WP_035175073.1 LCI fold-containing protein -
  P4829_RS06780 (P4829_06780) - 1324671..1325000 (-) 330 WP_003327517.1 hypothetical protein -
  P4829_RS06785 (P4829_06785) - 1325060..1325338 (-) 279 WP_003327515.1 hypothetical protein -
  P4829_RS06790 (P4829_06790) nucA/comI 1325530..1325955 (+) 426 WP_081250945.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P4829_RS06795 (P4829_06795) - 1326104..1326766 (+) 663 WP_063637522.1 MgtC/SapB family protein -
  P4829_RS06800 (P4829_06800) - 1326825..1327064 (-) 240 WP_003327512.1 hypothetical protein -
  P4829_RS06805 (P4829_06805) - 1327276..1327488 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  P4829_RS06810 (P4829_06810) - 1327548..1327763 (-) 216 WP_081112782.1 spore coat protein -
  P4829_RS06815 (P4829_06815) - 1328078..1329478 (+) 1401 WP_063637524.1 polysaccharide deacetylase family protein -
  P4829_RS06820 (P4829_06820) - 1329530..1330003 (-) 474 WP_063637839.1 YjfA family protein -
  P4829_RS06825 (P4829_06825) - 1330140..1330550 (-) 411 WP_063637525.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15458.32 Da        Isoelectric Point: 4.7462

>NTDB_id=808835 P4829_RS06790 WP_081250945.1 1325530..1325955(+) (nucA/comI) [Bacillus atrophaeus strain MBLB1156]
MKKWITSLFLTAAILFGLMGAEVYAPQDVKGASRYDQVLYFPFSRYPETGDHIKDAIAAGHSDVCTIDRAGADERREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=808835 P4829_RS06790 WP_081250945.1 1325530..1325955(+) (nucA/comI) [Bacillus atrophaeus strain MBLB1156]
ATGAAAAAATGGATCACGAGCTTATTTCTGACCGCAGCGATATTGTTTGGATTGATGGGTGCGGAAGTGTATGCTCCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTCCTTTACTTCCCATTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGATAGCGGCCGGGCATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGATTCCTACGAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGTGAAGAAGGCGGGGCCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATGGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

89.362

0.532