Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   P4829_RS06215 Genome accession   NZ_CP120846
Coordinates   1238072..1239235 (+) Length   387 a.a.
NCBI ID   WP_063637432.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1233072..1244235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS06190 (P4829_06190) - 1233782..1234972 (+) 1191 WP_081250921.1 putative glycoside hydrolase -
  P4829_RS06195 (P4829_06195) - 1235124..1235702 (+) 579 WP_003327580.1 GNAT family N-acetyltransferase -
  P4829_RS06200 (P4829_06200) spx 1235883..1236278 (+) 396 WP_003327578.1 transcriptional regulator Spx -
  P4829_RS06205 (P4829_06205) - 1236314..1236976 (-) 663 WP_003327577.1 TerC family protein -
  P4829_RS06210 (P4829_06210) mecA 1237256..1237912 (+) 657 WP_010788243.1 adaptor protein MecA Regulator
  P4829_RS06215 (P4829_06215) coiA 1238072..1239235 (+) 1164 WP_063637432.1 competence protein CoiA family protein Machinery gene
  P4829_RS06220 (P4829_06220) pepF 1239464..1241293 (+) 1830 WP_167375115.1 oligoendopeptidase F -
  P4829_RS06225 (P4829_06225) - 1241330..1241497 (-) 168 WP_003327573.1 hypothetical protein -
  P4829_RS06230 (P4829_06230) spxH 1241812..1242714 (-) 903 WP_003327572.1 protease adaptor protein SpxH -
  P4829_RS06235 (P4829_06235) - 1242711..1243109 (-) 399 WP_010788246.1 hemoglobin-like protein HbO -
  P4829_RS06240 (P4829_06240) - 1243376..1244086 (-) 711 WP_063637433.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 387 a.a.        Molecular weight: 45351.81 Da        Isoelectric Point: 9.4921

>NTDB_id=808834 P4829_RS06215 WP_063637432.1 1238072..1239235(+) (coiA) [Bacillus atrophaeus strain MBLB1156]
MFSAVTSEGKTVYLMKERYAATEASELRKTKFFCPVCREQLDVKLGSLKAPHFAHKQNKACTIEFEPESAYHLEGKKQLY
SWLKAKGCSPVLEPYVKSIQQRPDIMANVQGDMLAFEFQCANLAPDLLYKRTQGLKQAGAEPLWIIGGNRLKRTSRHFFQ
LSAFHWQFMKENPRQFLLFYCPEARSFYKLHHITPFYANYACASLEAIPLTKANVKDMWFSESVPSFQPSAWQNAITRFR
NKPPRFLSKEANHLRLLFYEKRQTPLPFLPPEVFAPIPLGAVFLSPVFIWQGHLYLYMTDLAEKRMSIRFSAVFRFCKMQ
IQKKRIHLRYEYSEQLLREALKQYINFLCGKEFLIEGEKEVYMVKYPVHDCRTLEGVMERDQTCFGE

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=808834 P4829_RS06215 WP_063637432.1 1238072..1239235(+) (coiA) [Bacillus atrophaeus strain MBLB1156]
TTGTTTAGTGCTGTGACATCAGAAGGTAAAACTGTTTACCTGATGAAAGAAAGATATGCTGCAACAGAAGCGTCGGAATT
GAGAAAAACGAAATTCTTTTGTCCGGTTTGCAGAGAACAGCTCGATGTCAAGCTCGGCTCTTTAAAAGCCCCGCATTTTG
CACATAAGCAGAATAAAGCTTGCACCATAGAGTTTGAACCGGAGAGCGCCTACCATTTAGAAGGGAAAAAGCAGCTTTAT
TCTTGGCTGAAAGCGAAAGGATGCTCACCTGTTCTGGAGCCATATGTAAAAAGCATACAGCAAAGGCCTGACATTATGGC
AAATGTACAAGGAGACATGCTGGCTTTTGAATTTCAATGCGCGAACCTCGCTCCAGACCTCTTATATAAACGCACGCAAG
GCTTAAAGCAAGCAGGGGCTGAACCGCTCTGGATCATCGGCGGAAACCGTTTAAAACGCACGTCAAGGCACTTTTTCCAG
CTATCTGCTTTTCATTGGCAATTCATGAAGGAGAATCCACGGCAGTTCCTGTTGTTTTACTGTCCGGAAGCACGCTCCTT
CTATAAGCTCCATCATATTACCCCGTTCTATGCGAATTATGCCTGCGCCTCACTCGAAGCAATCCCGCTCACAAAAGCAA
ATGTGAAGGATATGTGGTTCTCAGAATCCGTACCTTCCTTTCAGCCTTCTGCCTGGCAAAACGCCATTACCCGTTTTCGG
AATAAACCTCCCCGTTTTTTATCCAAAGAAGCGAATCATCTTCGGCTCCTTTTTTATGAAAAACGCCAGACGCCGCTACC
ATTTTTACCGCCTGAAGTATTTGCCCCCATTCCTCTTGGAGCCGTTTTTTTAAGTCCTGTTTTCATATGGCAGGGCCATC
TTTATCTGTATATGACCGACCTCGCAGAAAAGCGTATGTCCATCAGGTTTTCTGCTGTTTTTCGATTTTGTAAGATGCAG
ATTCAAAAAAAACGGATTCATTTAAGGTACGAATATAGCGAACAGCTTTTACGTGAGGCATTGAAACAGTACATCAATTT
TCTGTGCGGGAAGGAATTTTTAATAGAGGGTGAGAAAGAAGTATATATGGTGAAATATCCAGTTCATGACTGCCGCACGC
TTGAGGGTGTTATGGAGCGCGACCAAACCTGTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

57.609

95.09

0.548