Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   P4829_RS05695 Genome accession   NZ_CP120846
Coordinates   1138006..1138581 (+) Length   191 a.a.
NCBI ID   WP_010788160.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1133006..1143581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS05675 (P4829_05675) - 1133434..1134732 (-) 1299 WP_063637334.1 globin-coupled sensor protein -
  P4829_RS05680 (P4829_05680) - 1134890..1136422 (-) 1533 WP_063637336.1 FAD-dependent oxidoreductase -
  P4829_RS05685 (P4829_05685) - 1136558..1137415 (+) 858 WP_063637337.1 SDR family oxidoreductase -
  P4829_RS05690 (P4829_05690) - 1137446..1137679 (-) 234 WP_010788159.1 IDEAL domain-containing protein -
  P4829_RS05695 (P4829_05695) comK 1138006..1138581 (+) 576 WP_010788160.1 competence protein ComK Regulator
  P4829_RS05700 (P4829_05700) - 1138799..1139071 (+) 273 WP_063637339.1 excalibur calcium-binding domain-containing protein -
  P4829_RS05705 (P4829_05705) - 1139099..1140586 (-) 1488 WP_063637340.1 sodium:solute symporter -
  P4829_RS05710 (P4829_05710) - 1140583..1140783 (-) 201 WP_003327692.1 DUF3311 domain-containing protein -
  P4829_RS05715 (P4829_05715) - 1140908..1141273 (-) 366 WP_063637341.1 hypothetical protein -
  P4829_RS05720 (P4829_05720) - 1141428..1142051 (+) 624 WP_010788162.1 TVP38/TMEM64 family protein -
  P4829_RS05725 (P4829_05725) lepB 1142054..1142554 (+) 501 WP_003327688.1 signal peptidase I -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22264.48 Da        Isoelectric Point: 8.1215

>NTDB_id=808826 P4829_RS05695 WP_010788160.1 1138006..1138581(+) (comK) [Bacillus atrophaeus strain MBLB1156]
MSQKTDAPLDTYEVNSSTIAVLPEPMNGKMYSKIIEKDCTFYVSMKPLQIVDRSCRYFGSSYAGRKAGTYEVINISHKPP
IMVDLSNHIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTAVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRVEH
APKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 576 bp        

>NTDB_id=808826 P4829_RS05695 WP_010788160.1 1138006..1138581(+) (comK) [Bacillus atrophaeus strain MBLB1156]
ATGAGTCAGAAAACTGACGCACCCCTAGACACCTACGAAGTAAACAGCTCAACAATCGCCGTATTGCCCGAACCGATGAA
CGGGAAAATGTACTCAAAGATCATTGAAAAGGACTGCACGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGTTACTTTGGCTCAAGTTATGCGGGAAGAAAAGCGGGAACCTATGAAGTGATTAACATTTCTCACAAGCCGCCG
ATCATGGTGGACCTTTCCAACCATATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATATCACA
CGTGCATGTAAAAGAATTTAAAGCCACGGAATTCGACGATACAGCTGTGACCTTTTCCAATGGAAAAACAATGGAGCTCC
CGGTCTCCTGCAATTCGTTCGAAAACCAGGTCTACCGCACGGCATGGCTCAGAACAAAATTCCAAGACCGGGTCGAACAC
GCGCCAAAACGGCAGGAATTCATGCTGTACCCGAAGGAAGAACGCACGCGGATGATTTATGATTTTATTTTGCGCGAGCT
GGGCGAGCGGTACTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

87.5

100

0.88