Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   P4829_RS03755 Genome accession   NZ_CP120846
Coordinates   751388..751582 (-) Length   64 a.a.
NCBI ID   WP_277780806.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 746388..756582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS03735 (P4829_03735) rlmD 746685..748061 (+) 1377 WP_063638957.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  P4829_RS03740 (P4829_03740) - 748267..750216 (+) 1950 WP_063638956.1 DUF2075 domain-containing protein -
  P4829_RS03745 (P4829_03745) - 750260..750457 (-) 198 WP_063638955.1 hypothetical protein -
  P4829_RS03750 (P4829_03750) - 750627..751307 (-) 681 WP_269196929.1 tetratricopeptide repeat protein -
  P4829_RS03755 (P4829_03755) rapC 751388..751582 (-) 195 WP_277780806.1 hypothetical protein Regulator
  P4829_RS03760 (P4829_03760) - 751764..752069 (-) 306 WP_063638954.1 hypothetical protein -
  P4829_RS03765 (P4829_03765) - 752221..752616 (-) 396 WP_063638953.1 immunity 22 family protein -
  P4829_RS03770 (P4829_03770) - 752629..754518 (-) 1890 WP_063638952.1 T7SS effector LXG polymorphic toxin -
  P4829_RS03775 (P4829_03775) - 754848..755963 (+) 1116 WP_063638951.1 tetratricopeptide repeat protein -
  P4829_RS03780 (P4829_03780) - 755963..756085 (+) 123 WP_003328418.1 PhrK family phosphatase-inhibitory pheromone -

Sequence

Protein


Download         Length: 64 a.a.        Molecular weight: 7563.66 Da        Isoelectric Point: 4.6779

>NTDB_id=808820 P4829_RS03755 WP_277780806.1 751388..751582(-) (rapC) [Bacillus atrophaeus strain MBLB1156]
MRSLGTISSPHVGMKINEWNRHIQKFNVTDAEMLKAEIERDIDIMEEDQDLLIYYQSLHFVISL

Nucleotide


Download         Length: 195 bp        

>NTDB_id=808820 P4829_RS03755 WP_277780806.1 751388..751582(-) (rapC) [Bacillus atrophaeus strain MBLB1156]
GTGAGAAGTTTGGGCACGATTTCGTCTCCGCACGTTGGAATGAAAATTAATGAATGGAACCGGCATATTCAAAAGTTTAA
TGTGACTGACGCTGAAATGCTTAAAGCTGAGATCGAACGGGATATTGACATCATGGAAGAAGACCAAGACCTCTTGATTT
ACTATCAGTCTTTGCATTTCGTCATCAGCTTATGA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.667

93.75

0.484
  rapF Bacillus subtilis subsp. subtilis str. 168

51.786

87.5

0.453