Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P4829_RS01950 Genome accession   NZ_CP120846
Coordinates   381718..382155 (-) Length   145 a.a.
NCBI ID   WP_063638717.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 376718..387155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS01915 (P4829_01915) - 377284..377739 (+) 456 WP_010787599.1 RDD family protein -
  P4829_RS01920 (P4829_01920) - 377824..378153 (+) 330 WP_010787600.1 YckD family protein -
  P4829_RS01925 (P4829_01925) - 378257..378682 (+) 426 WP_003328070.1 MarR family transcriptional regulator -
  P4829_RS01930 (P4829_01930) - 378670..379011 (+) 342 WP_063638714.1 DUF3147 family protein -
  P4829_RS01935 (P4829_01935) - 379031..379759 (+) 729 WP_063638715.1 AAA family ATPase -
  P4829_RS01940 (P4829_01940) - 379829..381265 (+) 1437 WP_063638716.1 family 1 glycosylhydrolase -
  P4829_RS01945 (P4829_01945) nin/comJ 381301..381699 (-) 399 WP_003328075.1 competence protein ComJ Regulator
  P4829_RS01950 (P4829_01950) nucA/comI 381718..382155 (-) 438 WP_063638717.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P4829_RS01955 (P4829_01955) - 382377..384080 (-) 1704 WP_063638718.1 methyl-accepting chemotaxis protein -
  P4829_RS01960 (P4829_01960) hxlB 384209..384766 (-) 558 WP_010787607.1 6-phospho-3-hexuloisomerase -
  P4829_RS01965 (P4829_01965) hxlA 384773..385405 (-) 633 WP_061571093.1 3-hexulose-6-phosphate synthase -
  P4829_RS01970 (P4829_01970) - 385624..385989 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16033.82 Da        Isoelectric Point: 4.2248

>NTDB_id=808814 P4829_RS01950 WP_063638717.1 381718..382155(-) (nucA/comI) [Bacillus atrophaeus strain MBLB1156]
MDLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEERR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=808814 P4829_RS01950 WP_063638717.1 381718..382155(-) (nucA/comI) [Bacillus atrophaeus strain MBLB1156]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGAACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCGGCTCACTGATT
ATCCCGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

83.333

99.31

0.828