Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RPQ07_RS30660 Genome accession   NZ_CP135086
Coordinates   6856443..6857804 (+) Length   453 a.a.
NCBI ID   WP_313947461.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6851443..6862804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS30640 (RPQ07_30640) - 6852541..6853341 (-) 801 WP_313947457.1 peptidylprolyl isomerase -
  RPQ07_RS30645 (RPQ07_30645) - 6853498..6854205 (+) 708 WP_313947458.1 MBL fold metallo-hydrolase -
  RPQ07_RS30650 (RPQ07_30650) hisS 6854219..6855484 (+) 1266 WP_313947459.1 histidine--tRNA ligase -
  RPQ07_RS30655 (RPQ07_30655) - 6855753..6856388 (+) 636 WP_313947460.1 vitamin K epoxide reductase family protein -
  RPQ07_RS30660 (RPQ07_30660) rarA 6856443..6857804 (+) 1362 WP_313947461.1 replication-associated recombination protein A Machinery gene
  RPQ07_RS30665 (RPQ07_30665) - 6857827..6858519 (-) 693 WP_313947462.1 DUF2470 domain-containing protein -
  RPQ07_RS30670 (RPQ07_30670) rpsD 6858708..6859322 (+) 615 WP_313947463.1 30S ribosomal protein S4 -
  RPQ07_RS30675 (RPQ07_30675) - 6859369..6861573 (-) 2205 WP_313947464.1 ATP-binding protein -
  RPQ07_RS30680 (RPQ07_30680) - 6861732..6862163 (+) 432 WP_313947465.1 DUF948 domain-containing protein -
  RPQ07_RS30685 (RPQ07_30685) - 6862170..6862535 (+) 366 WP_313947466.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47872.32 Da        Isoelectric Point: 6.2979

>NTDB_id=808791 RPQ07_RS30660 WP_313947461.1 6856443..6857804(+) (rarA) [Streptomyces sp. AM8-1-1]
MEPDLFTAAAEERQEKDPSSSPLAVRMRPRVLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGPASVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRAAGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLESLTDEDLTGLLRRALTEERGLGGAVTLPADSEAHLLRIAGGDARRALTALEAAAGATLDKGEKE
ISLETVEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPAAL
PTAVAAAQAVAMIGFPEAALTLSHVTIALALAPKSNTATTAIGAALADVRAGLAGPVPPHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQQYAPDAVHGKRYYEPTRYGAEARYADVVEKVRERLRGGTAGD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=808791 RPQ07_RS30660 WP_313947461.1 6856443..6857804(+) (rarA) [Streptomyces sp. AM8-1-1]
GTGGAGCCCGACCTCTTTACCGCAGCTGCCGAAGAACGCCAGGAGAAGGATCCGTCCAGCAGTCCGCTGGCCGTCCGGAT
GCGTCCGCGCGTTCTCGACGAAGTCGTCGGCCAGCAGCATCTGCTCAAGCCCGGATCGCCGCTGCGCCGCCTCGTCGGCG
AGGGCGGCGGAGGTCCCGCGGGACCCGCGTCCGTCATCCTCTGGGGCCCGCCCGGCACCGGGAAGACGACCCTCGCCTAT
GTCGTCTCCAAGGCGACCAACAAGCGCTTCGTCGAGCTGTCGGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCAT
CGACGGAGCCCGCCGCGCGGCCGGCGGCTTCGGCAAGGAGACGGTCCTCTTCCTCGACGAGATCCACCGCTTCTCCAAGG
CCCAGCAGGACTCCCTTCTGCCGGCCGTCGAGAACCGCTGGGTGACGCTGATCGCCGCCACCACCGAGAACCCCTACTTC
TCGGTGATCTCCCCCCTGCTCTCCCGCTCGCTGCTGCTGACGCTGGAGTCGCTGACCGACGAGGACCTCACGGGACTGCT
GCGCCGGGCGCTCACCGAGGAGCGCGGCCTCGGCGGGGCCGTCACCCTGCCCGCCGACTCCGAGGCACATCTGCTCCGTA
TCGCGGGCGGCGACGCCCGGCGGGCCCTGACCGCTCTGGAGGCCGCCGCGGGCGCCACCCTCGACAAGGGTGAGAAGGAG
ATCTCGCTCGAGACGGTGGAGGAGACGGTCGACCGGGCGGCGGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGT
GGCCAGCGCGCTCATCAAGTCCATCCGCGGCTCCGACGTCGACGCGGCCCTGCACTATCTGGCGCGGATGATCGAGGCGG
GGGAGGACCCGCGCTTCATCGCGCGGCGGTTGATGATCTCGGCGAGTGAGGACATCGGCCTGGCGGACCCGGCGGCCCTG
CCGACCGCGGTCGCCGCGGCGCAGGCCGTGGCCATGATCGGCTTCCCGGAGGCCGCGCTCACCCTCAGCCATGTCACGAT
CGCGCTGGCGCTGGCCCCGAAGTCGAACACCGCCACGACGGCGATCGGTGCCGCGCTCGCCGATGTCCGGGCCGGTCTCG
CCGGTCCGGTCCCTCCGCATCTGCGGGACGGTCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGGTATGTCTAT
CCGCACGATGTGCCCGGCGGGATCGCGGCCCAGCAGTACGCCCCGGACGCGGTGCACGGCAAGCGGTACTACGAGCCCAC
GCGTTACGGCGCCGAGGCGCGGTACGCGGACGTCGTGGAGAAGGTGCGTGAGCGGCTGCGCGGTGGCACCGCCGGCGACT
GA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(200-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.988

94.702

0.426