Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   RPQ07_RS28270 Genome accession   NZ_CP135086
Coordinates   6354412..6356499 (-) Length   695 a.a.
NCBI ID   WP_313947024.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6349412..6361499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS28250 (RPQ07_28250) pgl 6349944..6350726 (-) 783 WP_313947020.1 6-phosphogluconolactonase -
  RPQ07_RS28255 (RPQ07_28255) opcA 6350723..6351724 (-) 1002 WP_313947021.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  RPQ07_RS28260 (RPQ07_28260) zwf 6351721..6353253 (-) 1533 WP_313947022.1 glucose-6-phosphate dehydrogenase -
  RPQ07_RS28265 (RPQ07_28265) tal 6353259..6354377 (-) 1119 WP_313947023.1 transaldolase -
  RPQ07_RS28270 (RPQ07_28270) recP/tkt 6354412..6356499 (-) 2088 WP_313947024.1 transketolase Machinery gene
  RPQ07_RS28275 (RPQ07_28275) - 6356841..6357815 (+) 975 WP_391839490.1 heme o synthase -
  RPQ07_RS28280 (RPQ07_28280) - 6357940..6358272 (+) 333 WP_313947026.1 hypothetical protein -
  RPQ07_RS28285 (RPQ07_28285) - 6358338..6359426 (+) 1089 WP_313947027.1 amidohydrolase family protein -
  RPQ07_RS28290 (RPQ07_28290) - 6359468..6360436 (-) 969 WP_313947028.1 COX15/CtaA family protein -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 75121.01 Da        Isoelectric Point: 5.0627

>NTDB_id=808786 RPQ07_RS28270 WP_313947024.1 6354412..6356499(-) (recP/tkt) [Streptomyces sp. AM8-1-1]
MSTKPTTTDLEWTDLDQRAVDTVRVLAMDSVQKVGNGHPGTAMSLAPAAYVLFQKLMQHDPADPDWTGRDRFVLSAGHSS
LTLYIQLYLAGYGLELDDLKAFRTWGSRTPGHPEYGHTPGVETTTGPLGQGVANAVGMAMAARYERGLFDPDAAPGTSPF
DHTIWAIAGDGCLQEGISSEASSLAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTLKRYEAYGWHVQRVEQLPSGDLDP
AGLYRALQAAKAETERPSFIAARSIIAWPAPHAQNTEAAHGSALGDEEVAATKRVLGFDPEKSFEVSDEVIAHTRGALDR
GREARGEWEKTFAAWRTANPERAAEFDRIRSTELPAGWEEKLPDFETGKGVATRAASGKILQALGAVVPELWGGSADLAG
SNNTTIDKTSSFLPVGNPLPGADPYGRTIHFGIREHAMAAVMNGITLHGNTRVYGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETAIAWREIMRRWTKEFGKGAPHGLALTRQGVPTYERNE
DAARGGYILFDAEGGEPQVVLIGTGSEVQLAVEAREQLQAAGIPTRVVSMPSVEWFEEQDQAYRDSVLPPAVRARVAVEA
GIGLTWHRFVGDAGRIVSLEHFGASADGKVLFREFGFTADEVAKAARESLEAAAR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=808786 RPQ07_RS28270 WP_313947024.1 6354412..6356499(-) (recP/tkt) [Streptomyces sp. AM8-1-1]
GTGAGCACCAAGCCGACCACCACAGACCTCGAGTGGACCGATCTGGACCAGCGGGCCGTCGATACCGTCCGCGTCCTGGC
CATGGATTCCGTACAGAAGGTCGGCAACGGCCACCCCGGTACGGCCATGAGCCTCGCGCCCGCCGCGTACGTCCTGTTCC
AGAAGCTGATGCAGCACGACCCGGCCGACCCCGACTGGACCGGCCGTGACCGGTTCGTCCTGTCCGCCGGTCACTCGTCG
CTGACCCTCTACATCCAGCTCTACCTGGCCGGTTACGGCCTGGAGCTCGACGACCTCAAGGCCTTCAGGACCTGGGGTTC
GAGGACCCCCGGACACCCGGAGTACGGACACACCCCCGGTGTCGAGACGACGACCGGCCCGCTCGGCCAGGGTGTCGCCA
ACGCGGTGGGCATGGCCATGGCCGCCCGCTACGAGCGCGGTCTGTTCGACCCGGACGCAGCCCCCGGCACCTCCCCGTTC
GACCACACCATCTGGGCCATCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCCTCGGAGGCGTCCTCGCTGGCCGGGCA
CCAGAAGCTGGGCAACCTGGTGCTGCTGTGGGACGACAACCACATCTCCATCGAGGGCGACACGGAGACGGCCGTCTCCG
AGGACACCCTCAAGCGCTACGAGGCGTACGGCTGGCACGTCCAGCGCGTCGAGCAGCTGCCGAGCGGCGACCTCGACCCG
GCGGGCCTCTACCGGGCCCTCCAGGCCGCCAAGGCCGAGACCGAGCGTCCCTCCTTCATCGCGGCGCGCTCGATCATCGC
CTGGCCTGCCCCGCACGCGCAGAACACCGAGGCCGCCCACGGCTCGGCGCTCGGCGACGAGGAGGTCGCGGCCACCAAGC
GGGTCCTCGGCTTCGACCCGGAGAAGAGCTTCGAGGTCTCCGACGAGGTCATCGCCCACACCCGCGGGGCGCTCGACCGC
GGCCGTGAGGCCCGTGGCGAGTGGGAGAAGACCTTCGCCGCATGGCGCACCGCGAATCCGGAGCGCGCCGCGGAGTTCGA
CCGGATCCGCTCGACCGAGCTGCCCGCCGGCTGGGAGGAGAAGCTCCCCGACTTCGAGACCGGCAAGGGTGTCGCCACCC
GCGCGGCCTCCGGCAAGATCCTTCAGGCGCTGGGCGCGGTCGTCCCCGAGCTGTGGGGCGGCTCCGCGGACCTGGCGGGC
TCGAACAACACGACGATCGACAAGACGTCGTCGTTCCTGCCCGTGGGCAACCCGCTGCCGGGCGCCGACCCCTACGGCCG
CACGATCCACTTCGGTATCCGTGAGCACGCGATGGCCGCCGTCATGAACGGCATCACGCTGCACGGCAACACCCGTGTGT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCGGTGCGGCTGTCGGCCCTGATGCACCTGCCGGTCACC
TACGTGTGGACGCACGACTCGATCGGTCTCGGCGAGGACGGCCCGACGCACCAGCCGGTCGAACACCTGGCCTCGCTGCG
CGCCATCCCCGGTCTGAACGTCGTCCGTCCGGCGGACGCCAACGAGACCGCGATCGCGTGGCGCGAGATCATGCGCCGCT
GGACCAAGGAGTTCGGCAAGGGCGCCCCGCACGGTCTGGCACTGACCCGGCAGGGTGTGCCGACCTACGAGCGCAACGAG
GATGCCGCCCGCGGCGGTTACATCCTGTTCGACGCCGAGGGCGGCGAGCCCCAGGTCGTCCTGATCGGCACCGGCTCCGA
GGTCCAGCTGGCCGTCGAGGCGCGCGAGCAGCTCCAGGCCGCGGGCATCCCGACCCGGGTGGTCTCGATGCCGTCGGTCG
AGTGGTTCGAGGAGCAGGACCAGGCGTACCGGGACTCGGTGCTGCCGCCGGCCGTGCGGGCACGGGTGGCGGTCGAGGCC
GGTATCGGACTCACCTGGCACCGCTTCGTCGGCGATGCCGGCCGCATCGTTTCGCTGGAGCACTTCGGCGCTTCGGCGGA
CGGCAAGGTTCTCTTCCGCGAGTTCGGCTTCACTGCCGACGAGGTCGCCAAGGCCGCGCGGGAATCTCTCGAAGCCGCCG
CACGCTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(576-682)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

43.658

97.554

0.426